Variant report

Variant	esv3433931
Chromosome Location	chr10:26864003-26868082
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr10:26863707-26864194	GM12878	blood:	n/a	n/a
2	ATF2	chr10:26863637-26864211	GM12878	blood:	n/a	n/a
3	BATF	chr10:26863751-26864136	GM12878	blood:	n/a	n/a
4	BATF	chr10:26863697-26864149	GM12878	blood:	n/a	n/a
5	BCL11A	chr10:26863648-26864087	GM12878	blood:	n/a	n/a
6	BCL11A	chr10:26863793-26864021	GM12878	blood:	n/a	n/a
7	BCLAF1	chr10:26863717-26864158	GM12878	blood:	n/a	n/a
8	BCLAF1	chr10:26863786-26864104	GM12878	blood:	n/a	n/a
9	BHLHE40	chr10:26863731-26864167	GM12878	blood:	n/a	n/a
10	CREB1	chr10:26863824-26864151	GM12878	blood:	n/a	n/a
11	CUX1	chr10:26863810-26864065	GM12878	blood:	n/a	n/a
12	EBF1	chr10:26863859-26864120	GM12878	blood:	n/a	n/a
13	EP300	chr10:26863706-26864190	GM12878	blood:	n/a	n/a
14	EP300	chr10:26863750-26864134	GM12878	blood:	n/a	n/a
15	EP300	chr10:26863760-26864140	GM12878	blood:	n/a	n/a
16	FOS	chr10:26867372-26867704	MCF10A-Er-Src	breast:	n/a	n/a
17	FOS	chr10:26867253-26867731	MCF10A-Er-Src	breast:	n/a	n/a
18	FOS	chr10:26867288-26867716	MCF10A-Er-Src	breast:	n/a	n/a
19	FOS	chr10:26867441-26867690	MCF10A-Er-Src	breast:	n/a	n/a
20	FOXM1	chr10:26863628-26864132	GM12878	blood:	n/a	n/a
21	IRF4	chr10:26863703-26864191	GM12878	blood:	n/a	n/a
22	IRF4	chr10:26863654-26864192	GM12878	blood:	n/a	n/a
23	MAFF	chr10:26866046-26866159	HepG2	liver:	n/a	n/a
24	MAFK	chr10:26865887-26866168	HepG2	liver:	n/a	chr10:26866016-26866027 chr10:26866017-26866028 chr10:26866016-26866031 chr10:26866017-26866028
25	MAFK	chr10:26866009-26866105	HepG2	liver:	n/a	chr10:26866016-26866027 chr10:26866017-26866028 chr10:26866016-26866031 chr10:26866017-26866028
26	MAX	chr10:26863771-26864068	GM12878	blood:	n/a	n/a
27	MEF2A	chr10:26863719-26864219	GM12878	blood:	n/a	n/a
28	MTA3	chr10:26863705-26864214	GM12878	blood:	n/a	n/a
29	MXI1	chr10:26863720-26864124	GM12878	blood:	n/a	n/a
30	MYC	chr10:26867329-26867446	MCF10A-Er-Src	breast:	n/a	n/a
31	NFATC1	chr10:26863708-26864200	GM12878	blood:	n/a	n/a
32	NFIC	chr10:26863678-26864270	GM12878	blood:	n/a	n/a
33	NFIC	chr10:26863614-26864246	GM12878	blood:	n/a	n/a
34	PAX5	chr10:26863591-26864133	GM12878	blood:	n/a	n/a
35	POLR2A	chr10:26866688-26867069	GM12878	blood:	n/a	n/a
36	POLR2A	chr10:26867547-26867777	GM12878	blood:	n/a	n/a
37	POLR2A	chr10:26863707-26865399	GM12891	blood:	n/a	n/a
38	POLR2A	chr10:26865546-26865764	GM12878	blood:	n/a	n/a
39	POLR2A	chr10:26864302-26864954	GM12891	blood:	n/a	n/a
40	POLR2A	chr10:26867042-26867086	GM12878	blood:	n/a	n/a
41	POLR2A	chr10:26864660-26865016	GM12891	blood:	n/a	n/a
42	POLR2A	chr10:26863558-26865296	GM12878	blood:	n/a	n/a
43	POLR2A	chr10:26864310-26864476	GM12878	blood:	n/a	n/a
44	POU2F2	chr10:26863599-26864146	GM12878	blood:	n/a	n/a
45	RCOR1	chr10:26863681-26864139	GM12878	blood:	n/a	n/a
46	RUNX3	chr10:26863794-26864142	GM12878	blood:	n/a	n/a
47	RUNX3	chr10:26863713-26864176	GM12878	blood:	n/a	n/a
48	SP1	chr10:26863698-26864132	GM12878	blood:	n/a	n/a
49	SP1	chr10:26863620-26864165	GM12878	blood:	n/a	n/a
50	SPI1	chr10:26863731-26864196	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000236894	TF binding region

Extended variants
information (count: 210 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:210 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375788149	chr10:26864022-26864023	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs200177981	chr10:26864023-26864024	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs787013	chr10:26864033-26864034	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs201225082	chr10:26864035-26864036	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs75823443	chr10:26864037-26864038	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs202208237	chr10:26864038-26864039	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs200501683	chr10:26864039-26864040	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs202000217	chr10:26864041-26864042	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs397756013	chr10:26864045-26864046	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs111731406	chr10:26864047-26864048	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs76721919	chr10:26864070-26864071	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs7924195	chr10:26864089-26864090	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs553068155	chr10:26864102-26864103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs572975768	chr10:26864108-26864109	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs538833086	chr10:26864110-26864111	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs372731675	chr10:26864128-26864129	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs114741249	chr10:26864130-26864131	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs114781616	chr10:26864131-26864132	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs117345468	chr10:26864150-26864151	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs558459313	chr10:26864160-26864161	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs111854894	chr10:26864175-26864176	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs113668900	chr10:26864188-26864189	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs148896577	chr10:26864205-26864206	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs138719985	chr10:26864209-26864210	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs72805236	chr10:26864211-26864212	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs144688089	chr10:26864213-26864214	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs142179719	chr10:26864215-26864216	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs139206846	chr10:26864216-26864217	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs148844787	chr10:26864219-26864220	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs115135382	chr10:26864222-26864223	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs114081808	chr10:26864223-26864224	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs140594022	chr10:26864229-26864230	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs148993831	chr10:26864236-26864237	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs574499500	chr10:26864242-26864243	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs7908301	chr10:26864243-26864244	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs7893158	chr10:26864245-26864246	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs75635980	chr10:26864249-26864250	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs79725495	chr10:26864250-26864251	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs78816593	chr10:26864269-26864270	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs78860015	chr10:26864294-26864295	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs79929558	chr10:26864295-26864296	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs540776934	chr10:26864298-26864299	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs73594371	chr10:26864338-26864339	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs540206024	chr10:26864391-26864392	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs560292537	chr10:26864411-26864412	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs371634014	chr10:26864426-26864427	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs12762094	chr10:26864430-26864431	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs545624349	chr10:26864478-26864479	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs200907634	chr10:26864486-26864487	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs148833237	chr10:26864499-26864500	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
abnormal development	18461090	CNVD

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26857600-26880200	Weak transcription	Adipose Nuclei	Adipose
2	chr10:26858400-26879400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:26860800-26881200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:26860800-26892600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr10:26861000-26864200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:26861000-26864200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:26861000-26864200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:26861000-26874400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:26861000-26886600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:26861200-26872000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:26861200-26884400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:26861200-26884800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:26862000-26864600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:26862000-26864600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:26862200-26864400	Strong transcription	Primary T cells from cord blood	blood
16	chr10:26862400-26882400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:26862800-26864800	Enhancers	Primary B cells from peripheral blood	blood
18	chr10:26863000-26864200	Weak transcription	Fetal Thymus	thymus
19	chr10:26863000-26864400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:26863000-26867000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:26863000-26879200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:26863200-26864200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:26863200-26875200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr10:26863400-26864800	Enhancers	Primary B cells from cord blood	blood
25	chr10:26863600-26864400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr10:26863800-26864600	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr10:26863800-26865000	ZNF genes & repeats	Thymus	Thymus
28	chr10:26864000-26864400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:26864200-26864400	ZNF genes & repeats	GM12878-XiMat	blood
30	chr10:26864200-26864600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
31	chr10:26864200-26864600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:26864200-26864800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
33	chr10:26864200-26864800	ZNF genes & repeats	Fetal Thymus	thymus
34	chr10:26864200-26865000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:26864400-26864600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr10:26864400-26864600	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr10:26864400-26864800	ZNF genes & repeats	Primary T cells from cord blood	blood
38	chr10:26864600-26875800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:26864600-26880400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:26864600-26894800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:26864800-26875000	Weak transcription	Primary T cells from cord blood	blood
42	chr10:26864800-26875200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr10:26864800-26881800	Weak transcription	Primary B cells from cord blood	blood
44	chr10:26864800-26882800	Weak transcription	Fetal Thymus	thymus
45	chr10:26865000-26874600	Weak transcription	Thymus	Thymus
46	chr10:26865000-26884600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:26867000-26867600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:26867200-26884000	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links