Variant report

Variant	esv3434083
Chromosome Location	chr6:127665998-127670132
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:112)
CpG islands
(count:61)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:112 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:127668308-127668759	HepG2	liver:	n/a	n/a
2	BCL3	chr6:127668206-127668807	A549	lung:	n/a	n/a
3	CEBPB	chr6:127668171-127668937	A549	lung:	n/a	n/a
4	CEBPB	chr6:127668228-127668819	A549	lung:	n/a	n/a
5	CEBPB	chr6:127668317-127668773	A549	lung:	n/a	n/a
6	CEBPB	chr6:127668425-127668738	IMR90	lung:	n/a	n/a
7	CEBPB	chr6:127668368-127668777	HepG2	liver:	n/a	n/a
8	CEBPB	chr6:127668244-127668814	MCF-7	breast:	n/a	n/a
9	CEBPB	chr6:127668289-127668760	Hela-S3	cervix:	n/a	n/a
10	CEBPB	chr6:127668192-127668893	MCF-7	breast:	n/a	n/a
11	CTCF	chr6:127669260-127669410	HMEC	breast:	n/a	n/a
12	CTCF	chr6:127669314-127669386	LNCaP	prostate:	n/a	n/a
13	CTCF	chr6:127669260-127669410	SAEC	small airway:	n/a	n/a
14	CTCF	chr6:127669220-127669370	HEEpiC	esophagus:	n/a	n/a
15	CTCF	chr6:127666261-127666292	GM10266	blood:	n/a	n/a
16	CTCF	chr6:127669280-127669430	NHEK	skin:	n/a	n/a
17	CTCF	chr6:127669234-127669434	GM12878	blood:	n/a	n/a
18	E2F4	chr6:127668244-127668695	MCF10A-Er-Src	breast:	n/a	n/a
19	ELF1	chr6:127668366-127668677	A549	lung:	n/a	chr6:127668567-127668578
20	ELF1	chr6:127668127-127668787	MCF-7	breast:	n/a	chr6:127668567-127668578
21	EP300	chr6:127668067-127668793	T-47D	breast:	n/a	chr6:127668642-127668656
22	EP300	chr6:127668069-127668927	A549	lung:	n/a	chr6:127668642-127668656
23	EP300	chr6:127668355-127668690	Hela-S3	cervix:	n/a	chr6:127668642-127668656
24	EP300	chr6:127668117-127668857	A549	lung:	n/a	chr6:127668642-127668656
25	ETS1	chr6:127668275-127668706	A549	lung:	n/a	n/a
26	FOS	chr6:127668002-127668781	MCF10A-Er-Src	breast:	n/a	chr6:127668511-127668522
27	FOS	chr6:127668285-127668787	MCF10A-Er-Src	breast:	n/a	chr6:127668511-127668522
28	FOS	chr6:127666626-127667052	MCF10A-Er-Src	breast:	n/a	n/a
29	FOS	chr6:127668282-127668787	MCF10A-Er-Src	breast:	n/a	chr6:127668511-127668522
30	FOS	chr6:127666630-127667052	MCF10A-Er-Src	breast:	n/a	n/a
31	FOS	chr6:127666625-127667044	MCF10A-Er-Src	breast:	n/a	n/a
32	FOS	chr6:127667930-127668833	MCF10A-Er-Src	breast:	n/a	chr6:127668511-127668522
33	FOS	chr6:127666638-127667051	MCF10A-Er-Src	breast:	n/a	n/a
34	FOSL1	chr6:127666543-127667168	HCT-116	colon:	n/a	n/a
35	FOSL2	chr6:127668197-127668787	A549	lung:	n/a	chr6:127668511-127668522
36	FOSL2	chr6:127668321-127668723	A549	lung:	n/a	chr6:127668511-127668522
37	FOXA1	chr6:127668193-127668705	T-47D	breast:	n/a	chr6:127668453-127668468
38	FOXA1	chr6:127668280-127668618	T-47D	breast:	n/a	chr6:127668453-127668468
39	FOXA1	chr6:127668294-127668624	HepG2	liver:	n/a	chr6:127668453-127668468
40	FOXA1	chr6:127668248-127668854	HepG2	liver:	n/a	chr6:127668453-127668468
41	FOXA1	chr6:127668189-127668763	HepG2	liver:	n/a	chr6:127668453-127668468
42	FOXA2	chr6:127668285-127668793	A549	lung:	n/a	n/a
43	FOXA2	chr6:127668125-127668794	A549	lung:	n/a	n/a
44	FOXA2	chr6:127668248-127668723	HepG2	liver:	n/a	n/a
45	GATA3	chr6:127668044-127668948	MCF-7	breast:	n/a	n/a
46	GATA3	chr6:127668263-127668741	T-47D	breast:	n/a	n/a
47	GATA3	chr6:127668190-127668700	MCF-7	breast:	n/a	n/a
48	GATA3	chr6:127668230-127668839	A549	lung:	n/a	n/a
49	GATA3	chr6:127668231-127668930	A549	lung:	n/a	n/a
50	GATA3	chr6:127668254-127668699	T-47D	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:127667691-127667741	GM12891	blood:	n/a
2	chr6:127667691-127667741	GM06990	blood:	n/a
3	chr6:127667691-127667741	PFSK-1	brain:	n/a
4	chr6:127667691-127667741	HNPCEpiC	eye:	n/a
5	chr6:127667691-127667741	SAEC	small airway:	n/a
6	chr6:127667691-127667741	Hela-S3	cervix:	n/a
7	chr6:127667691-127667741	A549	lung:	n/a
8	chr6:127667691-127667741	HRPEpiC	eye:	n/a
9	chr6:127667691-127667741	BE2_C	brain:	n/a
10	chr6:127667691-127667741	HMEC	breast:	n/a
11	chr6:127667691-127667741	IMR90	lung:	fetal
12	chr6:127667691-127667741	HRCEpiC	kidney:	n/a
13	chr6:127667691-127667741	SK-N-SH_RA	brain:	n/a
14	chr6:127667691-127667741	GM19239	blood:	n/a
15	chr6:127667691-127667741	K562	blood:	n/a
16	chr6:127667691-127667741	HCM	heart:	n/a
17	chr6:127667691-127667741	Jurkat	blood:	n/a
18	chr6:127667691-127667741	GM12892	blood:	n/a
19	chr6:127667691-127667741	HPAEpiC	pulmonary alveolar:	n/a
20	chr6:127667691-127667741	Hepatocyte	liver:	n/a
21	chr6:127667691-127667741	ProgFib	skin:	n/a
22	chr6:127667691-127667741	U87	brain:	n/a
23	chr6:127667691-127667741	ECC-1	luminal epithelium:	n/a
24	chr6:127667691-127667741	Caco-2	colon:	n/a
25	chr6:127667691-127667741	HAEpiC	amniotic membrane:	n/a
26	chr6:127667691-127667741	GM12878	blood:	n/a
27	chr6:127667691-127667741	HRE	kidney:	n/a
28	chr6:127667691-127667741	AG09309	skin:	n/a
29	chr6:127667691-127667741	NT2-D1	testis:	n/a
30	chr6:127667691-127667741	AG04449	skin:	fetal
31	chr6:127667691-127667741	NHBE	bronchial:	n/a
32	chr6:127667691-127667741	LNCaP	prostate:	n/a
33	chr6:127667691-127667741	HEK293	kidney:	embryo
34	chr6:127667691-127667741	ovcar-3	ovarian:	n/a
35	chr6:127667691-127667741	HEEpiC	esophagus:	n/a
36	chr6:127667691-127667741	NH-A	brain:	n/a
37	chr6:127667691-127667741	NB4	blood:	n/a
38	chr6:127667691-127667741	SK-N-MC	brain:	n/a
39	chr6:127667691-127667741	MCF10A-Er-Src	breast:	n/a
40	chr6:127667691-127667741	T-47D	breast:	n/a
41	chr6:127667691-127667741	SKMC	muscle:	n/a
42	chr6:127667691-127667741	AG09319	gingival:	n/a
43	chr6:127667691-127667741	NHDF-neo	bronchial:	n/a
44	chr6:127667691-127667741	HCF	heart:	n/a
45	chr6:127667691-127667741	MCF-7	breast:	n/a
46	chr6:127667691-127667741	HCT-116	colon:	n/a
47	chr6:127667691-127667741	H1-hESC	embryonic stem cell:	embryo
48	chr6:127667691-127667741	AG04450	lung:	fetal
49	chr6:127667691-127667741	SK-N-SH	brain:	n/a
50	chr6:127667691-127667741	HepG2	liver:	n/a

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:127587591..127589201-chr6:127668421..127670620,2	K562	blood:
2	chr6:127669193..127671594-chr6:127672805..127674451,2	MCF-7	breast:
3	chr6:127665440..127667332-chr6:127741973..127744614,2	MCF-7	breast:
4	chr6:127586417..127590637-chr6:127662350..127666578,4	K562	blood:
5	chr6:127668521..127671464-chr6:127672769..127675041,2	MCF-7	breast:
6	chr6:127586572..127589762-chr6:127662304..127666058,6	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNF146-3	chr6:127664756-127666054	NONHSAT114849
2	lnc-RNF146-3	chr6:127664772-127666472	NONHSAT114850

No data

Variant related genes	Relation type
ECHDC1	TF binding region
ECHDC1	CpG island
ENSG00000118518	chromatin interactions

Extended variants
information (count: 148 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:148 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554311547	chr6:127666030-127666031	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
2	rs372116730	chr6:127666054-127666055	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
3	rs13194028	chr6:127666068-127666069	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs59124966	chr6:127666073-127666074	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs576500600	chr6:127666087-127666088	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
6	rs543877467	chr6:127666129-127666130	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs60721473	chr6:127666231-127666232	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs574052309	chr6:127666316-127666317	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs541183087	chr6:127666339-127666340	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs536041730	chr6:127666364-127666365	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs185298310	chr6:127666386-127666387	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs527514804	chr6:127666391-127666392	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
13	rs9491737	chr6:127666407-127666408	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs372218817	chr6:127666428-127666429	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
15	rs145450379	chr6:127666431-127666432	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
16	rs531513359	chr6:127666464-127666465	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
17	rs55694901	chr6:127666504-127666505	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs147705538	chr6:127666561-127666562	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs140803673	chr6:127666564-127666565	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs528946558	chr6:127666595-127666596	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs539544569	chr6:127666610-127666611	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs190158904	chr6:127666620-127666621	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs540084181	chr6:127666645-127666646	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs201358677	chr6:127666698-127666699	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs11331612	chr6:127666752-127666753	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs398002796	chr6:127666770-127666771	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs557746931	chr6:127666905-127666906	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs144650314	chr6:127666944-127666945	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs571956426	chr6:127666955-127666956	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs537764480	chr6:127667009-127667010	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs7752238	chr6:127667069-127667070	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs573984991	chr6:127667070-127667071	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs541496801	chr6:127667126-127667127	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs11969693	chr6:127667154-127667155	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs11962184	chr6:127667160-127667161	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs149117441	chr6:127667184-127667185	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs143166335	chr6:127667202-127667203	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs369933091	chr6:127667222-127667223	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs577843477	chr6:127667243-127667244	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs563940656	chr6:127667261-127667262	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs555349471	chr6:127667345-127667346	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs151197672	chr6:127667382-127667383	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs561706078	chr6:127667411-127667412	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs528909116	chr6:127667482-127667483	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs547465072	chr6:127667565-127667566	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs565820005	chr6:127667572-127667573	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs182775040	chr6:127667573-127667574	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs551978368	chr6:127667609-127667610	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs145782984	chr6:127667666-127667667	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs573911639	chr6:127667691-127667692	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21785460	CNVD
Neurocytoma	17123091	CNVD
Chordoma	21602918	CNVD
Kartagener syndrome	16639409	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Metastatic melanoma	18483359	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Ependymoma	18628472	CNVD
Ewing''s sarcoma	18628472	CNVD
Leukemia	18628472	CNVD
Breast cancer	21958427	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17847001	CNVD
Cancer	17440070	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:213 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127661600-127666000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:127663200-127666000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:127663400-127666000	Active TSS	H1 Cell Line	embryonic stem cell
4	chr6:127663400-127666000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:127663400-127666000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:127663600-127666000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:127663600-127666000	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:127663600-127666000	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr6:127663600-127666000	Active TSS	Colon Smooth Muscle	Colon
10	chr6:127663600-127666000	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr6:127663600-127666000	Active TSS	Stomach Smooth Muscle	stomach
12	chr6:127663600-127666000	Active TSS	NHLF	lung
13	chr6:127663800-127666000	Active TSS	Brain Hippocampus Middle	brain
14	chr6:127663800-127666000	Active TSS	Psoas Muscle	Psoas
15	chr6:127663800-127666000	Active TSS	K562	blood
16	chr6:127663800-127666200	Active TSS	Rectal Smooth Muscle	rectum
17	chr6:127664000-127666000	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr6:127664000-127666000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:127664000-127666000	Active TSS	Fetal Brain Male	brain
20	chr6:127664600-127666000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:127665000-127666000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr6:127665200-127666000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:127665200-127666000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:127665400-127666000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr6:127665400-127666000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:127665400-127666000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr6:127665400-127666000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr6:127665400-127666000	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr6:127665400-127666000	Flanking Active TSS	Brain Germinal Matrix	brain
30	chr6:127665400-127666000	Enhancers	Fetal Heart	heart
31	chr6:127665400-127666000	Flanking Active TSS	Osteobl	bone
32	chr6:127665400-127666600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr6:127665600-127666000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:127665600-127666000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr6:127665600-127666000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:127665600-127666000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
37	chr6:127665600-127666000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
38	chr6:127665600-127666000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:127665600-127666000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr6:127665600-127666000	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr6:127665600-127666000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
42	chr6:127665600-127666000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:127665600-127666000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:127665600-127666000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr6:127665600-127666000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:127665600-127666000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:127665600-127666000	Flanking Active TSS	Duodenum Mucosa	Duodenum
48	chr6:127665600-127666000	Flanking Active TSS	Fetal Brain Female	brain
49	chr6:127665600-127666000	Flanking Active TSS	Fetal Lung	lung
50	chr6:127665600-127666000	Flanking Active TSS	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links