Variant report

Variant	esv3434113
Chromosome Location	chr7:56562551-56563368
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SUMF2-2	chr7:56560817-56564978	ENSG00000261275.1

Extended variants
information (count: 91 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:91 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73118651	chr7:56562551-56562552	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
2	rs113862729	chr7:56562552-56562553	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
3	rs74808716	chr7:56562575-56562576	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
4	rs78187797	chr7:56562579-56562580	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
5	rs76645038	chr7:56562583-56562584	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
6	rs567307627	chr7:56562603-56562604	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
7	rs73118652	chr7:56562620-56562621	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
8	rs534416675	chr7:56562622-56562623	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
9	rs73118654	chr7:56562624-56562625	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
10	rs73118657	chr7:56562647-56562648	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
11	rs76290591	chr7:56562663-56562664	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
12	rs75452189	chr7:56562671-56562672	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
13	rs546716752	chr7:56562672-56562673	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
14	rs76950866	chr7:56562673-56562674	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
15	rs10232838	chr7:56562682-56562683	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs556811185	chr7:56562688-56562689	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
17	rs73118658	chr7:56562693-56562694	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
18	rs568829433	chr7:56562702-56562703	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
19	rs73118659	chr7:56562711-56562712	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
20	rs79865429	chr7:56562729-56562730	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
21	rs78395444	chr7:56562739-56562740	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
22	rs74961696	chr7:56562748-56562749	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
23	rs75212704	chr7:56562755-56562756	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
24	rs11976129	chr7:56562763-56562764	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs73118662	chr7:56562775-56562776	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
26	rs75409542	chr7:56562792-56562793	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
27	rs112150339	chr7:56562797-56562798	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
28	rs190305811	chr7:56562811-56562812	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
29	rs73118663	chr7:56562817-56562818	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
30	rs553536711	chr7:56562818-56562819	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
31	rs578200681	chr7:56562823-56562824	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
32	rs28565075	chr7:56562826-56562827	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs75695488	chr7:56562846-56562847	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
34	rs79500177	chr7:56562861-56562862	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
35	rs114238466	chr7:56562874-56562875	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
36	rs372589079	chr7:56562884-56562885	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
37	rs202013264	chr7:56562891-56562892	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
38	rs200375113	chr7:56562893-56562894	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
39	rs200259588	chr7:56562904-56562905	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
40	rs74576694	chr7:56562911-56562912	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
41	rs78744947	chr7:56562925-56562926	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
42	rs142313762	chr7:56562930-56562931	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
43	rs563937381	chr7:56562935-56562936	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
44	rs368812478	chr7:56562943-56562944	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
45	rs531120058	chr7:56562944-56562945	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
46	rs76653093	chr7:56562953-56562954	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
47	rs78064126	chr7:56562960-56562961	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
48	rs528733633	chr7:56562961-56562962	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
49	rs74761357	chr7:56563001-56563002	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
50	rs73118664	chr7:56563018-56563019	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Wilms tumour	21544195	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Esophageal cancer	21851588	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Intracranial ependymoma	16609018	CNVD
Lung cancer	21911935	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17925434	CNVD
Glioma	24330732	CNVD
Lung adenocarcinoma	23938291	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Medullary thyroid carcinoma	18765511	CNVD
small cell lung cancer	20016488	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:56558600-56564600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr7:56558800-56564200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
3	chr7:56559200-56562600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
4	chr7:56559200-56564400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr7:56559400-56564800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:56559600-56563200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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