Variant report

Variant	esv3434358
Chromosome Location	chr5:179742478-179742679
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:179554088..179554742-chr5:179742467..179743013,2	MCF-7	breast:
2	chr5:179714082..179715807-chr5:179741478..179743115,2	MCF-7	breast:
3	chr5:179727104..179728705-chr5:179740247..179742971,2	MCF-7	breast:
4	chr5:179553164..179556296-chr5:179740039..179742529,3	MCF-7	breast:
5	chr5:179718624..179722005-chr5:179739945..179743525,7	MCF-7	breast:
6	chr5:179717535..179723990-chr5:179738269..179745292,15	MCF-7	breast:
7	chr5:179719970..179720873-chr5:179742427..179743336,6	MCF-7	breast:
8	chr5:179742474..179743351-chr5:179897684..179898604,3	MCF-7	breast:
9	chr5:179692323..179695194-chr5:179741562..179744368,2	K562	blood:
10	chr5:179740156..179743106-chr5:179752395..179754766,3	MCF-7	breast:
11	chr5:179627950..179628952-chr5:179742140..179743347,3	K562	blood:
12	chr5:179741922..179743146-chr5:179755337..179756583,4	MCF-7	breast:
13	chr5:179739299..179743379-chr5:179893176..179898905,6	MCF-7	breast:
14	chr5:179739596..179742574-chr5:180022400..180024079,2	MCF-7	breast:
15	chr5:179739339..179743235-chr5:179757984..179764634,9	MCF-7	breast:
16	chr5:179716694..179718257-chr5:179740990..179742816,2	MCF-7	breast:
17	chr5:179739190..179742513-chr5:179779970..179783347,3	MCF-7	breast:
18	chr5:179720585..179721111-chr5:179742335..179742892,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000050748	chromatin interactions
ENSG00000248367	chromatin interactions
ENSG00000131459	chromatin interactions

Extended variants
information (count: 7 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs377558950	chr5:179742485-179742486	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs67104945	chr5:179742530-179742531	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs561958369	chr5:179742544-179742545	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs13161805	chr5:179742609-179742610	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs58312286	chr5:179742628-179742629	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs557298588	chr5:179742647-179742648	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs547032231	chr5:179742667-179742668	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Thyroid cancer	19087340	CNVD
Acute myeloid leukemia	20729466	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	17550852	CNVD
Salivary gland tumor	18059337	CNVD
Renal cell carcinoma	19377443	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Renal cell carcinoma	18592004	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Prostate cancer	18632612	CNVD
epilepsy	18472482	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Sotos syndrome	21572526	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Sotos syndrome	17561922	CNVD
Sotos syndrome	16773131	CNVD
Mental retardation	16773131	CNVD
Sotos syndrome	22470819	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Acute myeloid leukemia	18000384	CNVD
Sudden cardiac death	19188705	CNVD
Basal cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Lung cancer	17297452	CNVD
Cancer	20164920	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21804112	CNVD
Myelofibrosis	22110671	CNVD
Sotos syndrome	22283845	CNVD
Breast cancer	16272173	CNVD
Sotos syndrome	20503325	CNVD
Lung adenocarcinoma	17086460	CNVD
Congenital Hypertrichosis Syndrome	21636067	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	19181860	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ehlers-danlos syndrome	17576883	CNVD
Lung cancer	17086460	CNVD
Autism	19246517	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Autism	20808228	CNVD
small cell lung cancer	20016488	CNVD
Autism	22543975	CNVD

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179720600-179742800	Weak transcription	Right Ventricle	heart
2	chr5:179720600-179743200	Weak transcription	Fetal Lung	lung
3	chr5:179720600-179756800	Weak transcription	NHDF-Ad	bronchial
4	chr5:179720600-179758400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:179720800-179743600	Weak transcription	Right Atrium	heart
6	chr5:179720800-179747000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:179721000-179743000	Weak transcription	Spleen	Spleen
8	chr5:179726800-179750600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:179727000-179755800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:179727200-179757400	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr5:179727200-179757400	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:179727400-179757600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:179727600-179757600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:179728600-179761400	Weak transcription	Aorta	Aorta
15	chr5:179728800-179750800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:179729600-179743200	Weak transcription	HSMM	muscle
17	chr5:179730800-179750800	Weak transcription	HSMMtube	muscle
18	chr5:179731000-179742800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:179731600-179755600	Weak transcription	Fetal Brain Female	brain
20	chr5:179732200-179750800	Weak transcription	Brain Substantia Nigra	brain
21	chr5:179732800-179751200	Weak transcription	Adipose Nuclei	Adipose
22	chr5:179733600-179744800	Weak transcription	Brain Hippocampus Middle	brain
23	chr5:179736800-179751800	Weak transcription	Left Ventricle	heart
24	chr5:179737400-179750000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:179737600-179746200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr5:179737600-179750800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:179738000-179758000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr5:179738200-179746200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:179738200-179755600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:179738600-179745200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:179738800-179743200	Weak transcription	Brain Anterior Caudate	brain
32	chr5:179738800-179743600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:179738800-179748600	Weak transcription	Lung	lung
34	chr5:179739000-179742600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr5:179739000-179743200	Weak transcription	Brain Angular Gyrus	brain
36	chr5:179739000-179743200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr5:179739000-179743200	Weak transcription	A549	lung
38	chr5:179739600-179761200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr5:179740000-179744800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr5:179740400-179757400	Weak transcription	NHLF	lung
41	chr5:179740600-179757600	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr5:179741000-179742800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr5:179741000-179750600	Strong transcription	Osteobl	bone
44	chr5:179741200-179742600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr5:179741200-179746200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:179741200-179750400	Weak transcription	Esophagus	oesophagus
47	chr5:179741200-179754000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr5:179741400-179742800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr5:179741400-179742800	Weak transcription	Fetal Muscle Leg	muscle
50	chr5:179741400-179743000	Weak transcription	Stomach Smooth Muscle	stomach

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