Variant report

Variant	esv3434576
Chromosome Location	chr19:27735990-27762391
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:41)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:41 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42530126..42531081-chr19:27738662..27739344,3	MCF-7	breast:
2	chr1:121484295..121485024-chr19:27738000..27738548,3	MCF-7	breast:
3	chr16:31225017..31226858-chr19:27739368..27741281,2	MCF-7	breast:
4	chr1:121482889..121485426-chr19:27733290..27740540,17	K562	blood:
5	chr1:121484242..121485223-chr19:27739792..27740312,2	MCF-7	breast:
6	chr19:27735077..27736730-chr6:26122693..26124685,2	MCF-7	breast:
7	chr1:121483957..121484819-chr19:27737979..27738502,3	MCF-7	breast:
8	chr10:42529442..42530392-chr19:27737662..27738480,2	MCF-7	breast:
9	chr1:121483890..121484451-chr19:27736926..27737426,2	MCF-7	breast:
10	chr16:69363397..69365027-chr19:27738551..27740871,2	MCF-7	breast:
11	chr19:18498589..18499092-chr19:27739098..27739794,2	HCT-116	colon:
12	chr1:149223688..149224417-chr19:27738499..27739289,2	MCF-7	breast:
13	chr1:12392654..12393407-chr19:27738850..27739687,2	MCF-7	breast:
14	chr17:58603504..58604171-chr19:27738843..27739764,2	MCF-7	breast:
15	chr19:27736247..27738846-chr8:34200775..34202275,2	MCF-7	breast:
16	chr16:5710936..5711647-chr19:27738832..27739454,2	MCF-7	breast:
17	chr10:42529082..42529941-chr19:27738664..27739193,3	MCF-7	breast:
18	chr13:28193921..28196192-chr19:27738694..27740822,2	MCF-7	breast:
19	chr1:121483138..121485425-chr19:27735007..27739872,9	MCF-7	breast:
20	chr18:60172493..60172994-chr19:27739182..27739818,2	MCF-7	breast:
21	chr19:27739276..27740188-chr3:90489068..90489568,2	MCF-7	breast:
22	chr12:34844445..34846343-chr19:27735903..27737749,2	K562	blood:
23	chr10:42528075..42531081-chr19:27735905..27739791,6	MCF-7	breast:
24	chr17:57931756..57934704-chr19:27735828..27738481,2	MCF-7	breast:
25	chr11:117787369..117787889-chr19:27738686..27739368,2	K562	blood:
26	chr1:121483051..121485429-chr19:27736244..27740196,9	MCF-7	breast:
27	chr1:244228644..244231049-chr19:27736676..27739352,2	MCF-7	breast:
28	chr10:42528106..42531063-chr19:27736683..27739174,2	K562	blood:
29	chr19:27731712..27733212-chr19:27736249..27738480,2	MCF-7	breast:
30	chr10:42530145..42531061-chr19:27738673..27739367,3	MCF-7	breast:
31	chr19:27738249..27739002-chr7:18865984..18866492,2	MCF-7	breast:
32	chr10:42528436..42531081-chr19:27736662..27739367,4	MCF-7	breast:
33	chr19:27738271..27740312-chr4:68262912..68265515,2	MCF-7	breast:
34	chr19:27738500..27739360-chr2:237227769..237228539,2	MCF-7	breast:
35	chr19:27738271..27739820-chr6:58772163..58774918,2	MCF-7	breast:
36	chr19:27731229..27733515-chr19:27737682..27740212,3	MCF-7	breast:
37	chr19:27738249..27739165-chr3:64009126..64009721,2	MCF-7	breast:
38	chr19:27730503..27733214-chr19:27735926..27737745,2	K562	blood:
39	chr1:121482889..121485426-chr19:27735763..27740540,17	K562	blood:
40	chr17:57921146..57922788-chr19:27733727..27736557,3	MCF-7	breast:
41	chr10:42529415..42529944-chr19:27739260..27739782,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163636	chromatin interactions
ENSG00000206737	chromatin interactions
ENSG00000062725	chromatin interactions
ENSG00000177238	chromatin interactions
ENSG00000180596	chromatin interactions
ENSG00000139517	chromatin interactions
ENSG00000180573	chromatin interactions
ENSG00000186184	chromatin interactions
ENSG00000259349	chromatin interactions
ENSG00000258429	chromatin interactions

Extended variants
information (count: 4286 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:4286 , 50 per page) page: 1 2 3 4 5 6 7 ... 86

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs565769931	chr19:27735994-27735995	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs77670975	chr19:27735998-27735999	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs138083418	chr19:27736000-27736001	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs149265270	chr19:27736004-27736005	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs78786219	chr19:27736005-27736006	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs539224696	chr19:27736006-27736007	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs551624710	chr19:27736011-27736012	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs201336349	chr19:27736014-27736015	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs71245823	chr19:27736016-27736017	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs3946380	chr19:27736019-27736020	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs71242470	chr19:27736021-27736022	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs369590153	chr19:27736022-27736023	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs569943921	chr19:27736024-27736025	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs36140280	chr19:27736029-27736030	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs372833347	chr19:27736035-27736036	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs200131842	chr19:27736038-27736039	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs141014406	chr19:27736039-27736040	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs201403445	chr19:27736040-27736041	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs199889942	chr19:27736042-27736043	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs374497782	chr19:27736043-27736044	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs74371496	chr19:27736044-27736045	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs71271896	chr19:27736046-27736047	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs143145734	chr19:27736050-27736051	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs1917989	chr19:27736053-27736054	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs375636087	chr19:27736054-27736055	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs10413399	chr19:27736063-27736064	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs113388901	chr19:27736067-27736068	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs75812309	chr19:27736069-27736070	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs574936703	chr19:27736072-27736073	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs71272195	chr19:27736079-27736080	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs148562780	chr19:27736081-27736082	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs3916548	chr19:27736082-27736083	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs535847637	chr19:27736085-27736086	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs148876809	chr19:27736087-27736088	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs76215598	chr19:27736091-27736092	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs150905839	chr19:27736092-27736093	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs377688228	chr19:27736094-27736095	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs79316141	chr19:27736099-27736100	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs546049796	chr19:27736100-27736101	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs71267875	chr19:27736101-27736102	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs3916549	chr19:27736105-27736106	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs71247850	chr19:27736106-27736107	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs74202054	chr19:27736108-27736109	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs564364920	chr19:27736110-27736111	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs74219965	chr19:27736112-27736113	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs36153429	chr19:27736113-27736114	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs371242399	chr19:27736117-27736118	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs79857176	chr19:27736121-27736122	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs76452589	chr19:27736123-27736124	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs113595280	chr19:27736125-27736126	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD

Chromatin state (count:281 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:27731800-27736200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
2	chr19:27731800-27737000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
3	chr19:27731800-27737000	ZNF genes & repeats	Osteobl	bone
4	chr19:27731800-27738600	ZNF genes & repeats	Thymus	Thymus
5	chr19:27731800-27739000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:27731800-27739600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
7	chr19:27731800-27739600	ZNF genes & repeats	Brain Hippocampus Middle	brain
8	chr19:27731800-27739600	ZNF genes & repeats	Fetal Intestine Large	intestine
9	chr19:27731800-27739600	ZNF genes & repeats	Ovary	ovary
10	chr19:27731800-27739600	ZNF genes & repeats	Spleen	Spleen
11	chr19:27731800-27739800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr19:27731800-27739800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
13	chr19:27731800-27739800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
14	chr19:27731800-27739800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr19:27731800-27739800	ZNF genes & repeats	Fetal Stomach	stomach
16	chr19:27731800-27740000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
17	chr19:27731800-27740000	ZNF genes & repeats	Colonic Mucosa	Colon
18	chr19:27731800-27740200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr19:27731800-27740400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
20	chr19:27731800-27740400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr19:27731800-27740400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr19:27731800-27740400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr19:27731800-27740400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
24	chr19:27731800-27740400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
26	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
27	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
28	chr19:27731800-27740400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
29	chr19:27731800-27740400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
30	chr19:27731800-27740400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
31	chr19:27731800-27740400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
32	chr19:27731800-27740400	ZNF genes & repeats	Fetal Heart	heart
33	chr19:27731800-27740400	ZNF genes & repeats	Fetal Lung	lung
34	chr19:27731800-27740400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
35	chr19:27731800-27740400	ZNF genes & repeats	Small Intestine	intestine
36	chr19:27731800-27740400	ZNF genes & repeats	Stomach Mucosa	stomach
37	chr19:27731800-27740600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
38	chr19:27731800-27740600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
39	chr19:27731800-27740600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr19:27731800-27740600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr19:27731800-27740600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
42	chr19:27731800-27740600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr19:27731800-27740600	ZNF genes & repeats	Primary B cells from cord blood	blood
44	chr19:27731800-27740600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
45	chr19:27731800-27740600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
46	chr19:27731800-27740600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
47	chr19:27731800-27740600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
48	chr19:27731800-27740600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr19:27731800-27740600	ZNF genes & repeats	Adipose Nuclei	Adipose
50	chr19:27731800-27740600	ZNF genes & repeats	Liver	Liver

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