Variant report
| Variant | esv3434653 |
|---|---|
| Chromosome Location | chr4:22650404-22654402 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:22645860..22647619-chr4:22652276..22653871,2 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-PACRGL-12 | chr4:22651411-22651921 | l_2614_chr4:22608314-22651921_testes |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs2618949 | chr4:22651423-22651424 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 2 | rs571446423 | chr4:22651456-22651457 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs73247179 | chr4:22651513-22651514 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs188679073 | chr4:22651543-22651544 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs145048871 | chr4:22651562-22651563 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs191502119 | chr4:22651563-22651564 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs554936955 | chr4:22651573-22651574 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs539821507 | chr4:22651595-22651596 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs182137142 | chr4:22651653-22651654 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs567485534 | chr4:22651724-22651725 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs369368890 | chr4:22651758-22651759 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs112563595 | chr4:22651759-22651760 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs187197555 | chr4:22651763-22651764 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 14 | rs536540867 | chr4:22651771-22651772 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 15 | rs545243414 | chr4:22651779-22651780 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 16 | rs563922554 | chr4:22651793-22651794 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs60749274 | chr4:22651903-22651904 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Variant related diseases (count:57)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17603634 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Cancer | 21637783 | CNVD |
| Melanoma | 21693616 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Chordoma | 21602918 | CNVD |
| HIV/AIDS | 22032296 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Autism | 22495311 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Chronic lymphocytic leukemia | 20421269 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Breast cancer | 21858162 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Cancer | 21183584 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Gastric cancer | 21586687 | CNVD |
| Breast cancer | 17133270 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Melanoma | 22183965 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Burkitt''s lymphoma | 20823134 | CNVD |
| Burkitt''s lymphoma | 19759907 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Cancer | 22183965 | CNVD |
| Gastric cancer | 16891809 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
