Variant report

Variant	esv3435031
Chromosome Location	chr6:141849459-141851507
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:141847245..141849947-chr6:141851433..141853403,2	MCF-7	breast:
2	chr6:141849385..141852203-chr6:141876737..141879397,2	MCF-7	breast:
3	chr6:141847245..141849947-chr6:141851433..141853403,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:64 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs572439807	chr6:141849486-141849487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs577540482	chr6:141849501-141849502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs147909844	chr6:141849637-141849638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs188129626	chr6:141849660-141849661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs576452042	chr6:141849661-141849662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs141299649	chr6:141849689-141849690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs534638253	chr6:141849699-141849700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs552740681	chr6:141849802-141849803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs146986512	chr6:141849810-141849811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs181293972	chr6:141849823-141849824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs148048168	chr6:141849861-141849862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs575099441	chr6:141849916-141849917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs545771299	chr6:141849934-141849935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs9496056	chr6:141849935-141849936	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs189144358	chr6:141850074-141850075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs140907940	chr6:141850120-141850121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs62430815	chr6:141850135-141850136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs540608516	chr6:141850166-141850167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs562221863	chr6:141850174-141850175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs34848860	chr6:141850196-141850197	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs35789749	chr6:141850229-141850230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs200542916	chr6:141850265-141850266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs12178403	chr6:141850282-141850283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs56984222	chr6:141850290-141850291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs61209705	chr6:141850302-141850303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs367667410	chr6:141850310-141850311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs551064256	chr6:141850313-141850314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs150083591	chr6:141850357-141850358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs533299741	chr6:141850379-141850380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs12178419	chr6:141850396-141850397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs551729516	chr6:141850447-141850448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs138397955	chr6:141850480-141850481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs34702419	chr6:141850502-141850503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs115695118	chr6:141850512-141850513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs372000741	chr6:141850518-141850519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs141552773	chr6:141850528-141850529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs143167200	chr6:141850602-141850603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs368941455	chr6:141850604-141850605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs145310697	chr6:141850653-141850654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs373114952	chr6:141850682-141850683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs535285741	chr6:141850683-141850684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs556774396	chr6:141850723-141850724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs575278707	chr6:141850889-141850890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs137940328	chr6:141850914-141850915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs557723834	chr6:141850927-141850928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs9484518	chr6:141850928-141850929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs540879639	chr6:141850931-141850932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs562385824	chr6:141850993-141850994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs529474348	chr6:141851017-141851018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112870243	chr6:141851045-141851046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Gastric cancer	17908304	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Breast cancer	21364760	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute monocytic leukemia	16498392	CNVD
Endocrine pancreatic tumor	17914106	CNVD
Soft tissue tumor	16732325	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
craniofacial dysmorphism	21918468	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141827800-141870200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links