Variant report

Variant	esv3435075
Chromosome Location	chr6:86052235-86271910
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3401)
CpG islands
(count:1403)
Chromatin interactive
region (count:135)
LncRNA
region (count:17)
Mature miRNA
region (count: 0)
miRNA target
sites (count:6)

(count:3401 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:86159880-86160249	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:86161143-86161177	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:86070634-86071380	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:86064781-86065291	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:86073657-86074017	K562	blood:	n/a	n/a
6	ARID3A	chr6:86192879-86193076	K562	blood:	n/a	n/a
7	ARID3A	chr6:86161407-86162208	HepG2	liver:	n/a	n/a
8	ARID3A	chr6:86225737-86226249	HepG2	liver:	n/a	n/a
9	ARID3A	chr6:86246818-86247127	HepG2	liver:	n/a	n/a
10	ARID3A	chr6:86105615-86106406	HepG2	liver:	n/a	n/a
11	ARID3A	chr6:86114420-86115706	HepG2	liver:	n/a	n/a
12	ARID3A	chr6:86073553-86074010	HepG2	liver:	n/a	n/a
13	ARID3A	chr6:86099918-86100702	HepG2	liver:	n/a	n/a
14	ATF2	chr6:86074151-86074451	GM12878	blood:	n/a	n/a
15	ATF2	chr6:86159112-86159556	GM12878	blood:	n/a	n/a
16	ATF2	chr6:86170781-86171327	GM12878	blood:	n/a	n/a
17	ATF2	chr6:86158918-86160044	GM12878	blood:	n/a	chr6:86159672-86159683
18	ATF2	chr6:86128695-86129204	GM12878	blood:	n/a	n/a
19	ATF2	chr6:86170740-86171575	GM12878	blood:	n/a	n/a
20	ATF3	chr6:86173728-86175110	HCT-116	colon:	n/a	n/a
21	ATF3	chr6:86114324-86114947	A549	lung:	n/a	n/a
22	BACH1	chr6:86100587-86100830	H1-hESC	embryonic stem cell:	n/a	n/a
23	BACH1	chr6:86192838-86193116	K562	blood:	n/a	n/a
24	BATF	chr6:86216073-86216495	GM12878	blood:	n/a	n/a
25	BATF	chr6:86074128-86074445	GM12878	blood:	n/a	chr6:86074275-86074286
26	BATF	chr6:86205760-86206009	GM12878	blood:	n/a	n/a
27	BATF	chr6:86205745-86206176	GM12878	blood:	n/a	n/a
28	BATF	chr6:86171016-86171311	GM12878	blood:	n/a	n/a
29	BATF	chr6:86159141-86159373	GM12878	blood:	n/a	n/a
30	BCL11A	chr6:86171061-86171293	GM12878	blood:	n/a	n/a
31	BCL3	chr6:86114295-86115799	A549	lung:	n/a	chr6:86115319-86115328 chr6:86115764-86115773
32	BCL3	chr6:86159030-86159945	GM12878	blood:	n/a	chr6:86159086-86159094
33	BCL3	chr6:86114423-86115773	A549	lung:	n/a	chr6:86115319-86115328 chr6:86115764-86115773
34	BCLAF1	chr6:86158990-86159383	GM12878	blood:	n/a	chr6:86159086-86159094
35	BCLAF1	chr6:86158958-86160316	GM12878	blood:	n/a	chr6:86159086-86159094
36	BCLAF1	chr6:86170788-86171421	GM12878	blood:	n/a	n/a
37	BCLAF1	chr6:86192762-86193100	GM12878	blood:	n/a	n/a
38	BCLAF1	chr6:86128592-86129098	GM12878	blood:	n/a	n/a
39	BHLHE40	chr6:86128694-86129098	GM12878	blood:	n/a	n/a
40	BHLHE40	chr6:86196372-86196389	K562	blood:	n/a	n/a
41	BHLHE40	chr6:86070834-86071098	GM12878	blood:	n/a	n/a
42	BHLHE40	chr6:86134768-86135218	GM12878	blood:	n/a	n/a
43	BHLHE40	chr6:86115028-86115689	GM12878	blood:	n/a	n/a
44	BHLHE40	chr6:86192884-86193135	K562	blood:	n/a	n/a
45	BHLHE40	chr6:86070780-86071274	A549	lung:	n/a	n/a
46	BHLHE40	chr6:86170229-86171340	GM12878	blood:	n/a	n/a
47	BHLHE40	chr6:86163482-86163577	GM12878	blood:	n/a	n/a
48	BHLHE40	chr6:86159045-86160284	GM12878	blood:	n/a	chr6:86159085-86159101
49	BHLHE40	chr6:86223159-86223173	GM12878	blood:	n/a	n/a
50	BHLHE40	chr6:86070783-86071275	HepG2	liver:	n/a	n/a

(count:1403 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:86100013-86100063	HMEC	breast:	n/a
2	chr6:86128453-86128503	IMR90	lung:	fetal
3	chr6:86159210-86159260	H1-hESC	embryonic stem cell:	embryo
4	chr6:86215383-86215433	HCM	heart:	n/a
5	chr6:86215383-86215433	AG09309	skin:	n/a
6	chr6:86159096-86159146	SK-N-MC	brain:	n/a
7	chr6:86174584-86174634	NHBE	bronchial:	n/a
8	chr6:86160468-86160518	HMEC	breast:	n/a
9	chr6:86124742-86124792	AG04449	skin:	fetal
10	chr6:86159426-86159476	ECC-1	luminal epithelium:	n/a
11	chr6:86159962-86160012	NT2-D1	testis:	n/a
12	chr6:86159197-86159247	RPTEC	kidney:	n/a
13	chr6:86162725-86162775	BJ	skin:	n/a
14	chr6:86100013-86100063	NT2-D1	testis:	n/a
15	chr6:86159426-86159476	PrEC	prostate:	n/a
16	chr6:86171768-86171818	MCF-7	breast:	n/a
17	chr6:86205036-86205086	IMR90	lung:	fetal
18	chr6:86205036-86205086	AG04450	lung:	fetal
19	chr6:86215383-86215433	HEK293	kidney:	embryo
20	chr6:86124742-86124792	NHDF-neo	bronchial:	n/a
21	chr6:86124742-86124792	NT2-D1	testis:	n/a
22	chr6:86159197-86159247	SAEC	small airway:	n/a
23	chr6:86113013-86113063	AoSMC	blood vessel:	n/a
24	chr6:86072437-86072487	ECC-1	luminal epithelium:	n/a
25	chr6:86072437-86072487	HRPEpiC	eye:	n/a
26	chr6:86159096-86159146	HCF	heart:	n/a
27	chr6:86160162-86160212	CMK	blood:	n/a
28	chr6:86159962-86160012	MCF-7	breast:	n/a
29	chr6:86158972-86159022	NB4	blood:	n/a
30	chr6:86159251-86159301	MCF-7	breast:	n/a
31	chr6:86205036-86205086	ECC-1	luminal epithelium:	n/a
32	chr6:86128453-86128503	HPAEpiC	pulmonary alveolar:	n/a
33	chr6:86159210-86159260	HCPEpiC	choroid plexus:	n/a
34	chr6:86124742-86124792	MCF-7	breast:	n/a
35	chr6:86160468-86160518	GM12892	blood:	n/a
36	chr6:86159426-86159476	AG10803	skin:	n/a
37	chr6:86113013-86113063	RPTEC	kidney:	n/a
38	chr6:86171768-86171818	AG10803	skin:	n/a
39	chr6:86159682-86159732	Hepatocyte	liver:	n/a
40	chr6:86159962-86160012	HNPCEpiC	eye:	n/a
41	chr6:86124742-86124792	RPTEC	kidney:	n/a
42	chr6:86159682-86159732	HIPEpiC	eye:	n/a
43	chr6:86159962-86160012	SK-N-SH	brain:	n/a
44	chr6:86160162-86160212	HCM	heart:	n/a
45	chr6:86124742-86124792	PANC-1	pancreas:	n/a
46	chr6:86159096-86159146	T-47D	breast:	n/a
47	chr6:86162725-86162775	ProgFib	skin:	n/a
48	chr6:86159251-86159301	SK-N-MC	brain:	n/a
49	chr6:86159210-86159260	GM06990	blood:	n/a
50	chr6:86158972-86159022	Caco-2	colon:	n/a

(count:135 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:86207507..86210473-chr6:86386895..86389586,3	MCF-7	breast:
2	chr6:86156006..86158396-chr6:86159870..86162328,2	K562	blood:
3	chr6:86258544..86261104-chr6:86387142..86389153,2	K562	blood:
4	chr6:86246870..86249179-chr6:86250224..86253982,4	K562	blood:
5	chr6:86151157..86153816-chr6:86156988..86158751,2	K562	blood:
6	chr6:86064836..86065431-chr6:86186448..86186988,2	MCF-7	breast:
7	chr6:86063054..86064000-chr6:86192521..86193280,2	MCF-7	breast:
8	chr6:86230515..86233270-chr6:86240880..86242983,2	MCF-7	breast:
9	chr6:86199220..86200919-chr6:86203979..86206335,3	K562	blood:
10	chr6:86115836..86118735-chr6:86124270..86126196,2	K562	blood:
11	chr6:86260582..86262333-chr6:86283688..86285782,2	K562	blood:
12	chr6:86168492..86171054-chr6:86176309..86178352,2	K562	blood:
13	chr1:121483913..121485978-chr6:86260101..86262043,2	MCF-7	breast:
14	chr6:86166423..86168095-chr6:86199386..86201242,2	MCF-7	breast:
15	chr6:86216856..86218839-chr6:86222143..86224772,2	MCF-7	breast:
16	chr6:86264055..86265860-chr6:86266095..86267988,2	MCF-7	breast:
17	chr6:86246140..86247926-chr6:86387829..86390203,2	K562	blood:
18	chr6:86268112..86269653-chr6:86301871..86303765,2	MCF-7	breast:
19	chr6:86064635..86065171-chr6:86192317..86193460,3	MCF-7	breast:
20	chr6:86226272..86228604-chr6:86231901..86233578,2	K562	blood:
21	chr6:86182269..86185102-chr6:86204566..86206145,2	K562	blood:
22	chr6:86166423..86168095-chr6:86199386..86201242,2	MCF-7	breast:
23	chr6:86052829..86055846-chr6:86386642..86389911,3	K562	blood:
24	chr6:86230515..86233270-chr6:86240880..86242983,2	MCF-7	breast:
25	chr6:86063054..86064000-chr6:86192521..86193280,2	MCF-7	breast:
26	chr12:4647633..4648466-chr6:86174133..86174644,2	Hela-S3	cervix:
27	chr6:86117125..86118735-chr6:86123946..86126196,2	K562	blood:
28	chr6:86064635..86065171-chr6:86192317..86193460,3	MCF-7	breast:
29	chr6:86062166..86065526-chr6:86065787..86070032,4	MCF-7	breast:
30	chr6:86263461..86265279-chr6:86276918..86279076,2	K562	blood:
31	chr6:86051692..86055053-chr6:86057245..86060918,3	K562	blood:
32	chr6:86188777..86190749-chr6:86198754..86200928,2	MCF-7	breast:
33	chr6:86227398..86231196-chr6:86231483..86235507,4	K562	blood:
34	chr6:86246106..86247862-chr6:86386298..86390203,3	K562	blood:
35	chr6:86097062..86098574-chr6:86102355..86104381,2	MCF-7	breast:
36	chr6:86060401..86063347-chr6:86063548..86065191,2	MCF-7	breast:
37	chr6:86205630..86207293-chr6:86209333..86212533,3	K562	blood:
38	chr2:86333196..86333767-chr6:86224978..86225478,2	HCT-116	colon:
39	chr6:86117125..86118735-chr6:86123946..86126196,2	K562	blood:
40	chr6:86207297..86209802-chr6:86213073..86214625,2	K562	blood:
41	chr6:86249376..86250949-chr6:86302957..86305018,2	MCF-7	breast:
42	chr6:86212509..86214733-chr6:86218733..86220237,2	K562	blood:
43	chr6:86115836..86118735-chr6:86124270..86126196,2	K562	blood:
44	chr6:86061404..86063952-chr6:86387861..86389381,3	MCF-7	breast:
45	chr6:86262845..86265792-chr6:86354340..86355847,2	K562	blood:
46	chr1:145096040..145096833-chr6:86203552..86204161,2	Hela-S3	cervix:
47	chr6:86159096..86161442-chr6:86164229..86167917,3	MCF-7	breast:
48	chr6:86258616..86262862-chr6:86386972..86389770,3	K562	blood:
49	chr6:86032840..86033397-chr6:86192567..86193443,2	K562	blood:
50	chr6:86165562..86167766-chr6:86176895..86178725,2	MCF-7	breast:

(count:17 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX14-4	chr6:86153656-86155994	NONHSAT113837
2	lnc-SNX14-1	chr6:86099731-86100095	NONHSAT113834
3	lnc-SNX14-4	chr6:86153658-86155994	ucscGeneNc_uc003pkm_2
4	lnc-FAM165A-1	chr6:86270033-86270491	ENSG00000223998.1
5	lnc-SNX14-1	chr6:86096965-86099275	NONHSAT113834
6	lnc-FAM165A-1	chr6:86270792-86270928	ENSG00000223998.1
7	lnc-SNX14-1	chr6:86096939-86099275	XLOC_005777
8	lnc-SNX14-1	chr6:86099731-86099904	ENSG00000234155
9	lnc-SYNCRIP-7	chr6:86215516-86215723	NONHSAT113839
10	lnc-SNX14-6	chr6:86136375-86136843	NONHSAT113835
11	lnc-SNX14-1	chr6:86099731-86099904	XLOC_005777
12	lnc-SYNCRIP-7	chr6:86216951-86217007	NONHSAT113839
13	lnc-SNX14-4	chr6:86156450-86156623	NONHSAT113837
14	lnc-SYNCRIP-7	chr6:86217686-86218175	NONHSAT113839
15	lnc-SNX14-2	chr6:86208159-86208764	NONHSAT113838
16	lnc-SNX14-4	chr6:86156450-86156623	ucscGeneNc_uc003pkm_2
17	lnc-SNX14-1	chr6:86096937-86099275	ENSG00000234155

No data

(count:6 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	NT5E	hsa-miR-30a-5p	chr6:86204036-86204057
2	NT5E	hsa-miR-124-3p	chr6:86204436-86204456
3	NT5E	hsa-miR-30a-5p	chr6:86204050-86204057
4	NT5E	hsa-miR-30a-5p	chr6:86205150-86205171
5	NT5E	hsa-miR-30a-5p	chr6:86205164-86205171
6	NT5E	hsa-miR-155-5p	chr6:86203834-86203858

Variant related genes	Relation type
DUTP5	TF binding region
TPT1P6	TF binding region
SNX14	TF binding region
ENSG00000234155	TF binding region
NT5E	TF binding region
DUTP5	CpG island
TPT1P6	CpG island
SNX14	CpG island
ENSG00000234155	CpG island
NT5E	CpG island
ENSG00000068654	chromatin interactions
ENSG00000047621	chromatin interactions
ENSG00000135317	chromatin interactions
ENSG00000132300	chromatin interactions
ENSG00000135318	chromatin interactions
ENSG00000177410	chromatin interactions
ENSG00000111247	chromatin interactions
ENSG00000223380	chromatin interactions
ENSG00000203875	chromatin interactions
ENSG00000163602	chromatin interactions
ENSG00000124201	chromatin interactions
ENSG00000135316	chromatin interactions

Extended variants
information (count: 7836 )
Associated
traits (count: 108 )

Variant overlapped rSNPs/rCNVs (count:7836 , 50 per page) page: 1 2 3 4 5 6 7 ... 157

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142531789	chr6:86052237-86052238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs4596450	chr6:86052246-86052247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs191960819	chr6:86052253-86052254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs538451348	chr6:86052334-86052335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs553523842	chr6:86052354-86052355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs527595659	chr6:86052366-86052367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs184068449	chr6:86052389-86052390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs552455314	chr6:86052405-86052406	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs150537120	chr6:86052464-86052465	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs536735372	chr6:86052477-86052478	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs554696279	chr6:86052479-86052480	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs576384086	chr6:86052502-86052503	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs113479917	chr6:86052531-86052532	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs139494423	chr6:86052536-86052537	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs569914961	chr6:86052538-86052539	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs112610867	chr6:86052570-86052571	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs191114	chr6:86052583-86052584	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs549889090	chr6:86052696-86052697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs527417164	chr6:86052698-86052699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs549290883	chr6:86052714-86052715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs192752792	chr6:86052779-86052780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs565911076	chr6:86052806-86052807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs139726913	chr6:86052829-86052830	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs560767743	chr6:86052832-86052833	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs149268802	chr6:86052937-86052938	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs557745330	chr6:86052952-86052953	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs144466616	chr6:86052994-86052995	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs571230578	chr6:86053015-86053016	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs184041934	chr6:86053028-86053029	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs187073809	chr6:86053034-86053035	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs547224584	chr6:86053074-86053075	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs565518760	chr6:86053081-86053082	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs62420145	chr6:86053104-86053105	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs191885209	chr6:86053105-86053106	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs139429761	chr6:86053113-86053114	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs570013965	chr6:86053119-86053120	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs370851164	chr6:86053169-86053170	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs537455272	chr6:86053179-86053180	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs558962357	chr6:86053210-86053211	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs577625654	chr6:86053228-86053229	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs541727372	chr6:86053229-86053230	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs145696200	chr6:86053322-86053323	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs147735933	chr6:86053375-86053376	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs313248	chr6:86053376-86053377	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs537151206	chr6:86053406-86053407	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs140941173	chr6:86053464-86053465	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs576028969	chr6:86053481-86053482	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs557128092	chr6:86053531-86053532	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs535548350	chr6:86053534-86053535	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs59195259	chr6:86053545-86053546	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:108)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
craniofacial dysmorphism	21918468	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	22521361	CNVD
abnormal development	18461090	CNVD
Myelodysplastic syndrome	18508791	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:4158 , 50 per page) page: 1 2 3 4 5 6 7 ... 84

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86050200-86054200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:86052000-86053200	Weak transcription	NHEK	skin
3	chr6:86052400-86052600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:86052600-86054200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:86053000-86053400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:86053000-86056000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:86053200-86053400	Enhancers	NHEK	skin
8	chr6:86053200-86053600	Enhancers	HMEC	breast
9	chr6:86053400-86053600	Enhancers	HSMMtube	muscle
10	chr6:86053400-86053600	Enhancers	NHDF-Ad	bronchial
11	chr6:86053400-86054200	Weak transcription	NHEK	skin
12	chr6:86053400-86059400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:86053600-86054000	Weak transcription	HMEC	breast
14	chr6:86053600-86054600	Weak transcription	NHDF-Ad	bronchial
15	chr6:86054000-86056400	Enhancers	HMEC	breast
16	chr6:86054200-86056000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:86054200-86056200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:86054200-86056400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:86054200-86056400	Enhancers	NHEK	skin
20	chr6:86054400-86054600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr6:86054400-86055400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:86054600-86055200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:86054600-86055200	Enhancers	NHDF-Ad	bronchial
24	chr6:86055200-86056000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr6:86055200-86057600	Weak transcription	NHDF-Ad	bronchial
26	chr6:86055400-86055800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:86055800-86056000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:86056000-86057000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:86056000-86064200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:86057000-86061000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:86057600-86058200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:86057600-86060600	Enhancers	NHDF-Ad	bronchial
33	chr6:86058200-86058600	Enhancers	Aorta	Aorta
34	chr6:86058200-86070400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:86058400-86058600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:86058600-86071000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:86059400-86060000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:86059600-86059800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:86060600-86065000	Weak transcription	NHDF-Ad	bronchial
40	chr6:86061000-86063800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:86063800-86066200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:86064200-86066200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:86064600-86065400	Enhancers	Fetal Intestine Small	intestine
44	chr6:86064600-86066200	Enhancers	NHLF	lung
45	chr6:86064800-86065000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr6:86064800-86065200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:86065000-86065200	Enhancers	Duodenum Mucosa	Duodenum
48	chr6:86065000-86065200	Enhancers	HSMM	muscle
49	chr6:86065000-86065200	Enhancers	HUVEC	blood vessel
50	chr6:86065000-86065400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links