Variant report

Variant	esv3435128
Chromosome Location	chr10:118988554-118991767
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118983149..118985231-chr10:118987345..118990233,2	MCF-7	breast:
2	chr10:118981865..118984447-chr10:118987245..118988846,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528825509	chr10:118991407-118991408	Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs185426882	chr10:118991420-118991421	Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs555410876	chr10:118991424-118991425	Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs568913602	chr10:118991438-118991439	Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs111944165	chr10:118991440-118991441	Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs370614760	chr10:118991501-118991502	Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs551546202	chr10:118991503-118991504	Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs115384584	chr10:118991521-118991522	Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs534085927	chr10:118991533-118991534	Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs74159130	chr10:118991550-118991551	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs367779208	chr10:118991552-118991553	Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs363329	chr10:118991582-118991583	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs375596499	chr10:118991615-118991616	Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs138231154	chr10:118991653-118991654	Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs2532799	chr10:118991695-118991696	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs12414893	chr10:118991727-118991728	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs572276210	chr10:118991728-118991729	Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Neuroticism	17667963	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Sezary syndrome	18413736	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118991400-118992200	Active TSS	Spleen	Spleen

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