Variant report
| Variant | esv3435540 |
|---|---|
| Chromosome Location | chrX:56345173-56345556 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs372080971 | chrX:56345251-56345252 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs143895986 | chrX:56345272-56345273 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs186113235 | chrX:56345355-56345356 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs34315286 | chrX:56345450-56345451 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs6521389 | chrX:56345505-56345506 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs189311373 | chrX:56345538-56345539 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:41)
| Disease | PMID | Source |
|---|---|---|
| Cancer | 21637783 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Cancer | 16751803 | CNVD |
| Intellectual disability | 23615299 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Burkitt''s lymphoma | 20823134 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Schizophrenia | 23904455 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| infertile | 22614455 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Autism | 22495311 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Cancer | 20581869 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Cancer | 20164919 | CNVD |
| Premature ovarian failure | 20952765 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| primary effusion lymphomas | 17116491 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Testicular cancer | 18059402 | CNVD |
| Seminomas | 18059402 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Ovarian cancer | 19835627 | CNVD |
| Mental retardation | 21735175 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:56344800-56345600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chrX:56345000-56346600 | ZNF genes & repeats | iPS-18 Cell Line | embryonic stem cell |
