Variant report

Variant	esv3436042
Chromosome Location	chr15:83896048-83901046
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83877096..83880148-chr15:83900858..83903461,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TM6SF1-2	chr15:83895940-83896949	ENSG00000245208

Variant related genes	Relation type
UQCRQ	miRNA target sites

Extended variants
information (count: 36 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559800496	chr15:83896048-83896049	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs576078066	chr15:83896061-83896062	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs527510958	chr15:83896093-83896094	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs149419898	chr15:83896156-83896157	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs539901484	chr15:83896177-83896178	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs79239124	chr15:83896178-83896179	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs11855917	chr15:83896193-83896194	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs146378539	chr15:83896268-83896269	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs552344676	chr15:83896274-83896275	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs71412297	chr15:83896292-83896293	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs375426993	chr15:83896303-83896304	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs570694959	chr15:83896360-83896361	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs186006647	chr15:83896364-83896365	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs191119549	chr15:83896404-83896405	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs138399410	chr15:83896416-83896417	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs531643184	chr15:83896445-83896446	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs562969292	chr15:83896452-83896453	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs73438913	chr15:83896460-83896461	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs568485446	chr15:83896463-83896464	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs199586284	chr15:83896508-83896509	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs541599285	chr15:83896533-83896534	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs551893961	chr15:83896563-83896564	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs183257639	chr15:83896592-83896593	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs186819570	chr15:83896603-83896604	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs7162082	chr15:83896608-83896609	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs577095014	chr15:83896622-83896623	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs547669521	chr15:83896634-83896635	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs192518529	chr15:83896651-83896652	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs11853559	chr15:83896664-83896665	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs114165341	chr15:83896678-83896679	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs142493932	chr15:83896691-83896692	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs574689274	chr15:83896697-83896698	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs555846522	chr15:83896811-83896812	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs538345420	chr15:83896858-83896859	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs558665809	chr15:83896891-83896892	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs182554789	chr15:83896907-83896908	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
abnormal development	18461090	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	20409316	CNVD
Mental retardation	17847001	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21364760	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links