Variant report

Variant	esv3436263
Chromosome Location	chr3:178548158-178552756
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:178521575..178524548-chr3:178545773..178548206,3	K562	blood:
2	chr3:178545028..178546976-chr3:178549794..178552747,2	K562	blood:
3	chr3:178543542..178551305-chr3:178552157..178562303,11	MCF-7	breast:
4	chr3:178543542..178551305-chr3:178552157..178562303,11	MCF-7	breast:

Extended variants
information (count: 140 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:140 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554048161	chr3:178548164-178548165	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs576992720	chr3:178548178-178548179	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs192725953	chr3:178548194-178548195	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs373256989	chr3:178548202-178548203	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs566029250	chr3:178548249-178548250	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs528799244	chr3:178548286-178548287	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs7640531	chr3:178548398-178548399	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs575681238	chr3:178548403-178548404	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs148847488	chr3:178548459-178548460	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs142580355	chr3:178548519-178548520	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs35170176	chr3:178548525-178548526	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs537796213	chr3:178548543-178548544	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs150924812	chr3:178548551-178548552	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs73183376	chr3:178548578-178548579	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs140676043	chr3:178548583-178548584	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs564290378	chr3:178548588-178548589	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs533118786	chr3:178548602-178548603	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs183054009	chr3:178548625-178548626	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs61798137	chr3:178548627-178548628	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs61432821	chr3:178548644-178548645	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs556747470	chr3:178548710-178548711	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs75382777	chr3:178548746-178548747	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs540915928	chr3:178548863-178548864	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs112225983	chr3:178548895-178548896	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs72341464	chr3:178548896-178548897	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs568760820	chr3:178548904-178548905	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs60732270	chr3:178548906-178548907	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs145783780	chr3:178548925-178548926	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs138515138	chr3:178548939-178548940	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs142640687	chr3:178548970-178548971	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs539643214	chr3:178548982-178548983	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs549483130	chr3:178549028-178549029	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs555883071	chr3:178549037-178549038	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs9865610	chr3:178549044-178549045	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs146762819	chr3:178549173-178549174	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs186995470	chr3:178549184-178549185	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs34204368	chr3:178549244-178549245	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs191433822	chr3:178549277-178549278	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs183582786	chr3:178549303-178549304	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs7643872	chr3:178549349-178549350	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs9848615	chr3:178549381-178549382	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs558765165	chr3:178549475-178549476	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs557913850	chr3:178549552-178549553	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs138913556	chr3:178549560-178549561	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs563002563	chr3:178549578-178549579	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs531687933	chr3:178549595-178549596	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs535388156	chr3:178549623-178549624	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs149373199	chr3:178549624-178549625	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs7646198	chr3:178549717-178549718	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs545380922	chr3:178549773-178549774	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	16608533	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	21785460	CNVD
Breast cancer	17133270	CNVD
epilepsy	18472482	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Myxofibrosarcoma	16751306	CNVD
Parkinson disease	21907011	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Anaplastic thyroid cancer	17989125	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Ovarian cancer	18208621	CNVD
Thyroid cancer	17317825	CNVD
Thyroid cancer	17989125	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	21806811	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	16751803	CNVD
abnormal development	18461090	CNVD
lymphocytic leukemia	21291569	CNVD
Autism	19653912	CNVD
Endometrial cancer	19261849	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	17217626	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164920	CNVD
Acute lymphoblastic leukemia	18458336	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178541200-178558400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:178541800-178550600	Weak transcription	Fetal Kidney	kidney
3	chr3:178542000-178563600	Weak transcription	Aorta	Aorta
4	chr3:178543600-178551200	Weak transcription	Ovary	ovary
5	chr3:178545200-178557800	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:178546400-178563000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:178547800-178550400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr3:178550400-178562800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:178552600-178554000	Enhancers	GM12878-XiMat	blood

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