Variant report

Variant	esv3436499
Chromosome Location	chr10:19459771-19462319
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 160 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:160 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534970757	chr10:19459907-19459908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs185933301	chr10:19459950-19459951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs188686943	chr10:19459951-19459952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs11008761	chr10:19459979-19459980	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs72790793	chr10:19459988-19459989	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs575757045	chr10:19460005-19460006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs74118815	chr10:19460050-19460051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs542332254	chr10:19460051-19460052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs143904578	chr10:19460055-19460056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs181158932	chr10:19460066-19460067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs7896771	chr10:19460093-19460094	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs532455498	chr10:19460098-19460099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs185369570	chr10:19460185-19460186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs532282485	chr10:19460252-19460253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs550885050	chr10:19460298-19460299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs199557689	chr10:19460348-19460349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs61851300	chr10:19460350-19460351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs367679043	chr10:19460352-19460353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs370975796	chr10:19460353-19460354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs546061244	chr10:19460355-19460356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs5783656	chr10:19460358-19460359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs369432307	chr10:19460374-19460375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs60065192	chr10:19460376-19460377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs58736136	chr10:19460378-19460379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs368844624	chr10:19460379-19460380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs71387049	chr10:19460380-19460381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs562173924	chr10:19460381-19460382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs199738592	chr10:19460384-19460385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs72050316	chr10:19460385-19460386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs2358345	chr10:19460386-19460387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs12255954	chr10:19460388-19460389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs12263490	chr10:19460389-19460390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs60515694	chr10:19460392-19460393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs12769963	chr10:19460394-19460395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs12762789	chr10:19460395-19460396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs12764231	chr10:19460402-19460403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs56935133	chr10:19460409-19460410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs61039660	chr10:19460410-19460411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs12265078	chr10:19460414-19460415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs57643964	chr10:19460415-19460416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs537286309	chr10:19460416-19460417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs201134385	chr10:19460425-19460426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs61032093	chr10:19460426-19460427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs529369497	chr10:19460432-19460433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs58689633	chr10:19460433-19460434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs549744531	chr10:19460455-19460456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs371467503	chr10:19460465-19460466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs562656560	chr10:19460466-19460467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs71982420	chr10:19460503-19460504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs529871344	chr10:19460504-19460505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19438400-19489000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19457600-19475800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:19458200-19465800	Weak transcription	Fetal Intestine Large	intestine

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