Variant report

Variant	esv3437537
Chromosome Location	chr19:56088665-56091513
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:72)
CpG islands
(count:489)
Chromatin interactive
region (count:13)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:72 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr19:56091329-56093788	A549	lung:	n/a	chr19:56093661-56093670 chr19:56092350-56092359
2	CHD1	chr19:56091005-56092989	IMR90	lung:	n/a	n/a
3	EGR1	chr19:56090301-56091039	H1-hESC	embryonic stem cell:	n/a	n/a
4	EGR1	chr19:56090775-56091032	K562	blood:	n/a	n/a
5	EGR1	chr19:56090807-56091119	K562	blood:	n/a	n/a
6	ELF1	chr19:56091440-56091844	GM12878	blood:	n/a	chr19:56091645-56091658
7	ELF1	chr19:56091418-56091848	K562	blood:	n/a	chr19:56091645-56091658
8	ELF1	chr19:56091462-56091652	K562	blood:	n/a	n/a
9	FOSL1	chr19:56090782-56091051	K562	blood:	n/a	n/a
10	FOSL1	chr19:56090745-56091127	H1-hESC	embryonic stem cell:	n/a	n/a
11	FOSL1	chr19:56090777-56091044	K562	blood:	n/a	n/a
12	GABPA	chr19:56091429-56091877	A549	lung:	n/a	n/a
13	HCFC1	chr19:56091256-56093043	Hela-S3	cervix:	n/a	n/a
14	MAX	chr19:56091376-56093828	A549	lung:	n/a	chr19:56092224-56092234 chr19:56091562-56091572 chr19:56092600-56092610 chr19:56091909-56091919 chr19:56092361-56092371
15	MAZ	chr19:56091119-56093072	IMR90	lung:	n/a	chr19:56092224-56092234 chr19:56091562-56091572 chr19:56092600-56092610 chr19:56091909-56091919 chr19:56092361-56092371
16	MAZ	chr19:56091251-56092828	GM12878	blood:	n/a	chr19:56092224-56092234 chr19:56091562-56091572 chr19:56092600-56092610 chr19:56091909-56091919 chr19:56092361-56092371
17	MAZ	chr19:56091415-56093026	K562	blood:	n/a	chr19:56092224-56092234 chr19:56091562-56091572 chr19:56092600-56092610 chr19:56091909-56091919 chr19:56092361-56092371
18	MAZ	chr19:56091445-56091699	Hela-S3	cervix:	n/a	chr19:56091562-56091572
19	MAZ	chr19:56091495-56093286	HepG2	liver:	n/a	chr19:56092224-56092234 chr19:56091562-56091572 chr19:56092600-56092610 chr19:56091909-56091919 chr19:56092361-56092371
20	MXI1	chr19:56091163-56093260	SK-N-SH	brain:	n/a	n/a
21	POLR2A	chr19:56090422-56090536	A549	lung:	n/a	n/a
22	POLR2A	chr19:56089085-56089165	HUVEC	blood vessel:	n/a	n/a
23	POLR2A	chr19:56089467-56089479	HepG2	liver:	n/a	n/a
24	POLR2A	chr19:56091446-56091794	A549	lung:	n/a	n/a
25	POLR2A	chr19:56091364-56092750	A549	lung:	n/a	n/a
26	POLR2A	chr19:56090053-56090152	A549	lung:	n/a	n/a
27	POLR2A	chr19:56091291-56092783	K562	blood:	n/a	n/a
28	POLR2A	chr19:56088980-56089063	HUVEC	blood vessel:	n/a	n/a
29	POLR2A	chr19:56091368-56091385	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr19:56090329-56090623	A549	lung:	n/a	n/a
31	POLR2A	chr19:56088093-56089100	PANC-1	pancreas:	n/a	n/a
32	POLR2A	chr19:56089533-56089838	A549	lung:	n/a	n/a
33	POLR2A	chr19:56088071-56088982	PFSK-1	brain:	n/a	n/a
34	POLR2A	chr19:56091262-56091852	PANC-1	pancreas:	n/a	n/a
35	POLR2A	chr19:56088914-56089231	HepG2	liver:	n/a	n/a
36	POLR2A	chr19:56087312-56088720	PFSK-1	brain:	n/a	n/a
37	POLR2A	chr19:56091373-56091576	GM12878	blood:	n/a	n/a
38	POLR2A	chr19:56088683-56088695	HepG2	liver:	n/a	n/a
39	POLR2A	chr19:56091435-56091596	A549	lung:	n/a	n/a
40	POLR2A	chr19:56091448-56091854	HUVEC	blood vessel:	n/a	n/a
41	POLR2A	chr19:56088259-56088724	K562	blood:	n/a	n/a
42	POLR2A	chr19:56091001-56092990	PFSK-1	brain:	n/a	n/a
43	POLR2A	chr19:56091407-56091870	GM12878	blood:	n/a	n/a
44	POLR2A	chr19:56091377-56092668	ProgFib	skin:	n/a	n/a
45	POLR2A	chr19:56090394-56090741	A549	lung:	n/a	n/a
46	POLR2A	chr19:56091398-56091893	Hela-S3	cervix:	n/a	n/a
47	POLR2A	chr19:56089323-56089457	HepG2	liver:	n/a	n/a
48	POLR2A	chr19:56087495-56088727	MCF10A-Er-Src	breast:	n/a	n/a
49	POLR2A	chr19:56088493-56089106	GM12878	blood:	n/a	n/a
50	POLR2A	chr19:56090002-56090393	A549	lung:	n/a	n/a

(count:489 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:56089493-56089543	HCPEpiC	choroid plexus:	n/a
2	chr19:56089493-56089543	HCPEpiC	choroid plexus:	n/a
3	chr19:56089012-56089062	SAEC	small airway:	n/a
4	chr19:56089807-56089857	U87	brain:	n/a
5	chr19:56089275-56089325	LNCaP	prostate:	n/a
6	chr19:56089406-56089456	SK-N-SH	brain:	n/a
7	chr19:56090200-56090250	HEK293	kidney:	embryo
8	chr19:56090200-56090250	NHBE	bronchial:	n/a
9	chr19:56089807-56089857	AG10803	skin:	n/a
10	chr19:56090781-56090831	MCF-7	breast:	n/a
11	chr19:56089406-56089456	AG10803	skin:	n/a
12	chr19:56089493-56089543	T-47D	breast:	n/a
13	chr19:56089807-56089857	NHDF-neo	bronchial:	n/a
14	chr19:56090200-56090250	SKMC	muscle:	n/a
15	chr19:56089275-56089325	BJ	skin:	n/a
16	chr19:56090686-56090736	ovcar-3	ovarian:	n/a
17	chr19:56090781-56090831	RPTEC	kidney:	n/a
18	chr19:56089807-56089857	ovcar-3	ovarian:	n/a
19	chr19:56090686-56090736	SKMC	muscle:	n/a
20	chr19:56089275-56089325	HIPEpiC	eye:	n/a
21	chr19:56090686-56090736	HRE	kidney:	n/a
22	chr19:56089493-56089543	SAEC	small airway:	n/a
23	chr19:56090686-56090736	K562	blood:	n/a
24	chr19:56089012-56089062	K562	blood:	n/a
25	chr19:56090781-56090831	HEEpiC	esophagus:	n/a
26	chr19:56090686-56090736	NB4	blood:	n/a
27	chr19:56089406-56089456	HEK293	kidney:	embryo
28	chr19:56089406-56089456	AG09319	gingival:	n/a
29	chr19:56089493-56089543	U87	brain:	n/a
30	chr19:56090686-56090736	BJ	skin:	n/a
31	chr19:56090781-56090831	U87	brain:	n/a
32	chr19:56090781-56090831	K562	blood:	n/a
33	chr19:56090781-56090831	HAEpiC	amniotic membrane:	n/a
34	chr19:56089807-56089857	HCPEpiC	choroid plexus:	n/a
35	chr19:56090200-56090250	HCF	heart:	n/a
36	chr19:56089807-56089857	HMEC	breast:	n/a
37	chr19:56090781-56090831	GM12878	blood:	n/a
38	chr19:56090686-56090736	GM19239	blood:	n/a
39	chr19:56089493-56089543	HCM	heart:	n/a
40	chr19:56090781-56090831	IMR90	lung:	fetal
41	chr19:56090200-56090250	HCT-116	colon:	n/a
42	chr19:56089493-56089543	PANC-1	pancreas:	n/a
43	chr19:56090781-56090831	HMEC	breast:	n/a
44	chr19:56090200-56090250	HNPCEpiC	eye:	n/a
45	chr19:56090686-56090736	AG09309	skin:	n/a
46	chr19:56089493-56089543	Caco-2	colon:	n/a
47	chr19:56089406-56089456	HCM	heart:	n/a
48	chr19:56089493-56089543	ProgFib	skin:	n/a
49	chr19:56089807-56089857	RPTEC	kidney:	n/a
50	chr19:56090781-56090831	Caco-2	colon:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:56085801..56089181-chr19:56090146..56094195,5	MCF-7	breast:
2	chr19:56089123..56090949-chr2:85134145..85135899,2	MCF-7	breast:
3	chr19:55916968..55919550-chr19:56086420..56090390,4	K562	blood:
4	chr19:56087628..56093963-chr19:56108517..56113906,9	MCF-7	breast:
5	chr19:56086664..56089219-chr19:56150784..56152646,2	MCF-7	breast:
6	chr19:56085801..56089181-chr19:56090146..56094195,5	MCF-7	breast:
7	chr19:56089635..56093860-chr19:56114549..56117863,7	MCF-7	breast:
8	chr19:56087311..56094258-chr19:56108819..56113699,11	K562	blood:
9	chr19:56087478..56090277-chr19:56092054..56093869,2	MCF-7	breast:
10	chr19:55916968..55919340-chr19:56087208..56090390,3	K562	blood:
11	chr19:56076616..56078313-chr19:56088787..56090501,2	K562	blood:
12	chr19:55973159..55975306-chr19:56090568..56094014,3	K562	blood:
13	chr19:56091409..56094452-chr19:56108819..56113428,6	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF579-1	chr19:56088136-56088780	ENSG00000267730.1

No data

Variant related genes	Relation type
ENSG00000267730	TF binding region
ENSG00000267730	CpG island
ENSG00000267730	chromatin interactions
ENSG00000108106	chromatin interactions
ENSG00000218891	chromatin interactions
ENSG00000063241	chromatin interactions
ENSG00000171443	chromatin interactions
ENSG00000171425	chromatin interactions
ENSG00000173581	chromatin interactions
ENSG00000213015	chromatin interactions
ENSG00000261221	chromatin interactions
ENSG00000179943	chromatin interactions

Extended variants
information (count: 108 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:108 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547192912	chr19:56088672-56088673	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
2	rs193086394	chr19:56088684-56088685	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
3	rs183899158	chr19:56088697-56088698	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
4	rs573898270	chr19:56088705-56088706	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
5	rs542561918	chr19:56088725-56088726	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
6	rs559095646	chr19:56088734-56088735	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
7	rs59859551	chr19:56088738-56088739	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
8	rs551039612	chr19:56088920-56088921	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
9	rs564674216	chr19:56088946-56088947	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
10	rs531000608	chr19:56088957-56088958	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
11	rs550810469	chr19:56088968-56088969	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
12	rs567903884	chr19:56089015-56089016	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
13	rs536556006	chr19:56089072-56089073	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
14	rs114967586	chr19:56089171-56089172	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
15	rs1053817	chr19:56089219-56089220	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs59026892	chr19:56089235-56089236	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs57846854	chr19:56089238-56089239	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs188794000	chr19:56089275-56089276	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
19	rs372800344	chr19:56089297-56089298	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
20	rs559077167	chr19:56089302-56089303	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
21	rs377230490	chr19:56089311-56089312	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
22	rs575846445	chr19:56089313-56089314	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
23	rs537238346	chr19:56089325-56089326	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs368966691	chr19:56089333-56089334	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
25	rs148396831	chr19:56089339-56089340	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
26	rs556879939	chr19:56089343-56089344	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
27	rs2292812	chr19:56089353-56089354	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs147579300	chr19:56089389-56089390	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
29	rs192618440	chr19:56089418-56089419	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
30	rs139081832	chr19:56089419-56089420	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
31	rs141760060	chr19:56089420-56089421	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
32	rs200989303	chr19:56089433-56089434	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
33	rs376172183	chr19:56089473-56089474	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
34	rs544645026	chr19:56089517-56089518	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
35	rs564634790	chr19:56089522-56089523	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
36	rs540417047	chr19:56089543-56089544	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
37	rs550720287	chr19:56089546-56089547	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
38	rs199499964	chr19:56089549-56089550	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
39	rs561336164	chr19:56089564-56089565	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
40	rs377689274	chr19:56089565-56089566	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
41	rs546959462	chr19:56089614-56089615	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
42	rs567190593	chr19:56089866-56089867	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
43	rs371081934	chr19:56089870-56089871	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
44	rs552652206	chr19:56089871-56089872	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
45	rs569327746	chr19:56089872-56089873	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
46	rs538352819	chr19:56089890-56089891	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
47	rs557084595	chr19:56089895-56089896	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
48	rs113850871	chr19:56089908-56089909	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
49	rs144853314	chr19:56089909-56089910	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
50	rs10643219	chr19:56089910-56089911	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Breast cancer	20459607	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Myelofibrosis	22110671	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Alzheimer''s disease	22166940	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Glioblastoma multiforme	21922591	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:419 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56075800-56090400	Weak transcription	Psoas Muscle	Psoas
2	chr19:56076000-56091000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr19:56076000-56091000	Weak transcription	Right Atrium	heart
4	chr19:56076600-56091000	Weak transcription	Fetal Heart	heart
5	chr19:56078600-56091000	Weak transcription	Fetal Kidney	kidney
6	chr19:56081200-56088800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr19:56081800-56091000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr19:56082200-56088800	Weak transcription	Pancreas	Pancrea
9	chr19:56083800-56091000	Weak transcription	HepG2	liver
10	chr19:56084200-56091000	Weak transcription	K562	blood
11	chr19:56085200-56090000	Weak transcription	Fetal Lung	lung
12	chr19:56085600-56088800	Weak transcription	Brain Hippocampus Middle	brain
13	chr19:56086000-56090000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr19:56086000-56091000	Weak transcription	NH-A	brain
15	chr19:56086200-56088800	Weak transcription	Small Intestine	intestine
16	chr19:56086200-56091000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr19:56086200-56091200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr19:56086400-56091200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr19:56086600-56088800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr19:56086600-56091000	Weak transcription	Fetal Brain Male	brain
21	chr19:56086600-56091400	Weak transcription	Primary T cells from cord blood	blood
22	chr19:56086800-56088800	Weak transcription	HSMMtube	muscle
23	chr19:56086800-56089200	Weak transcription	Esophagus	oesophagus
24	chr19:56086800-56090600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr19:56086800-56091000	Weak transcription	Brain Substantia Nigra	brain
26	chr19:56086800-56091000	Weak transcription	HMEC	breast
27	chr19:56087000-56091000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr19:56087000-56091200	Weak transcription	Stomach Mucosa	stomach
29	chr19:56087200-56090000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr19:56087200-56091000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr19:56087200-56091000	Weak transcription	GM12878-XiMat	blood
32	chr19:56087200-56091200	Weak transcription	Fetal Thymus	thymus
33	chr19:56087400-56089000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr19:56087400-56089400	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr19:56087400-56089400	Strong transcription	Fetal Muscle Trunk	muscle
36	chr19:56087400-56090000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr19:56087400-56090000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr19:56087400-56090200	Strong transcription	Fetal Intestine Large	intestine
39	chr19:56087400-56090400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr19:56087400-56090400	Strong transcription	Brain Germinal Matrix	brain
41	chr19:56087400-56090400	Strong transcription	Fetal Muscle Leg	muscle
42	chr19:56087400-56090600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr19:56087400-56090600	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr19:56087400-56090600	Strong transcription	Fetal Brain Female	brain
45	chr19:56087600-56088800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr19:56087600-56089000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr19:56087600-56089200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr19:56087600-56089200	Strong transcription	Brain Cingulate Gyrus	brain
49	chr19:56087600-56089200	Strong transcription	Osteobl	bone
50	chr19:56087600-56089400	Strong transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links