Variant report

Variant	esv3437572
Chromosome Location	chr18:14794252-14805234
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD30B-8	chr18:14797781-14797853	NONHSAT058529
2	lnc-ANKRD30B-8	chr18:14797660-14797688	NONHSAT058529

Variant related genes	Relation type
GNS	miRNA target sites
GNPTAB	miRNA target sites

Extended variants
information (count: 483 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:483 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs549536737	chr18:14794295-14794296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs569870176	chr18:14794311-14794312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs574333367	chr18:14794378-14794379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs113905992	chr18:14794471-14794472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs369067954	chr18:14794500-14794501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs538911763	chr18:14794521-14794522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs145860865	chr18:14794532-14794533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs372469264	chr18:14794541-14794542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs566064305	chr18:14794549-14794550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs34229264	chr18:14794557-14794558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs28625314	chr18:14794568-14794569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs34944292	chr18:14794618-14794619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs535162889	chr18:14794620-14794621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs34042546	chr18:14794623-14794624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs190520962	chr18:14794633-14794634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs574936763	chr18:14794643-14794644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs182286637	chr18:14794707-14794708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs376521104	chr18:14794712-14794713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs557495279	chr18:14794730-14794731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs111326268	chr18:14794736-14794737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs34564801	chr18:14794743-14794744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs146648234	chr18:14794745-14794746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs141216633	chr18:14794753-14794754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs35919080	chr18:14794780-14794781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs185433777	chr18:14794785-14794786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs145017623	chr18:14794820-14794821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs34223267	chr18:14794837-14794838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs541462862	chr18:14794839-14794840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs34798005	chr18:14794927-14794928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs34374116	chr18:14794932-14794933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs543288761	chr18:14794937-14794938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs10853251	chr18:14794948-14794949	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs189511596	chr18:14794964-14794965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs149368321	chr18:14794968-14794969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs565792154	chr18:14795002-14795003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs34761123	chr18:14795012-14795013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs528495705	chr18:14795020-14795021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs34911728	chr18:14795023-14795024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs35055122	chr18:14795028-14795029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs377540779	chr18:14795039-14795040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs373698417	chr18:14795054-14795055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs548572722	chr18:14795087-14795088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs143721518	chr18:14795103-14795104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs148234359	chr18:14795105-14795106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs180696172	chr18:14795113-14795114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs62086412	chr18:14795115-14795116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs147430288	chr18:14795124-14795125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs200420696	chr18:14795169-14795170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs573173878	chr18:14795170-14795171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs540641745	chr18:14795173-14795174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Acute myeloid leukemia	16864856	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Kartagener syndrome	16639409	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Cancer	21183584	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Human rectal carcinomas	16397240	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19150955	CNVD
Follicular lymphoma	20505157	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	18923191	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Trisomy 18 syndrome	17576883	CNVD
lymphocytic leukemia	21291569	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ewing''s sarcoma	17952124	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Breast cancer	21364760	CNVD
Heart disease	21282601	CNVD
Glioblastoma multiforme	21922591	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute myeloid leukemia	17377590	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16620391	CNVD
Myelofibrosis	22110671	CNVD
Retinoblastoma	21504564	CNVD
Glioma	17123091	CNVD
Neurodevelopmental disorder	22521361	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14779400-14796600	Weak transcription	Osteobl	bone
2	chr18:14796600-14798200	ZNF genes & repeats	Osteobl	bone
3	chr18:14797000-14797400	Enhancers	Placenta	Placenta
4	chr18:14797400-14798600	Weak transcription	Placenta	Placenta
5	chr18:14798200-14817600	Weak transcription	Osteobl	bone
6	chr18:14798600-14799000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr18:14798600-14799000	Enhancers	Placenta	Placenta
8	chr18:14799000-14817600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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