Variant report

Variant	esv3437736
Chromosome Location	chr17:45666753-45671451
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr17:45669308-45669361	MCF-7	breast:	n/a	n/a
2	POLR2A	chr17:45671077-45671150	MCF-7	breast:	n/a	n/a
3	POLR2A	chr17:45667912-45667935	MCF-7	breast:	n/a	n/a
4	POLR2A	chr17:45670953-45670994	MCF-7	breast:	n/a	n/a
5	POLR2A	chr17:45669044-45669386	MCF-7	breast:	n/a	n/a
6	POLR2A	chr17:45667497-45667521	A549	lung:	n/a	n/a
7	POLR2A	chr17:45667876-45667909	MCF-7	breast:	n/a	n/a
8	POLR2A	chr17:45667797-45667812	MCF-7	breast:	n/a	n/a
9	POLR2A	chr17:45667418-45667558	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
NPEPPS	TF binding region

Extended variants
information (count: 165 )
Associated
traits (count: 116 )

Variant overlapped rSNPs/rCNVs (count:165 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs539887190	chr17:45666827-45666828	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs2644323	chr17:45666831-45666832	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs2611859	chr17:45666836-45666837	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs553354797	chr17:45666897-45666898	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs12949501	chr17:45666941-45666942	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs192551242	chr17:45666975-45666976	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs117952616	chr17:45666998-45666999	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs535739914	chr17:45667070-45667071	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs111690704	chr17:45667076-45667077	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs2259089	chr17:45667116-45667117	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs555949850	chr17:45667140-45667141	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs2259135	chr17:45667209-45667210	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs557015252	chr17:45667280-45667281	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs12942816	chr17:45667294-45667295	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs150715232	chr17:45667299-45667300	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs113818871	chr17:45667334-45667335	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs371537849	chr17:45667355-45667356	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs556686335	chr17:45667378-45667379	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs149430257	chr17:45667414-45667415	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs112071046	chr17:45667421-45667422	Strong transcription Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs139762964	chr17:45667435-45667436	Strong transcription Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs111396791	chr17:45667436-45667437	Strong transcription Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs559050564	chr17:45667450-45667451	Strong transcription Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs4092460	chr17:45667550-45667551	Strong transcription Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs184231117	chr17:45667564-45667565	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs113762885	chr17:45667569-45667570	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs562003407	chr17:45667574-45667575	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs377043196	chr17:45667587-45667588	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs530659858	chr17:45667597-45667598	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs112983664	chr17:45667607-45667608	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs550794888	chr17:45667614-45667615	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs570963033	chr17:45667655-45667656	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs113950296	chr17:45667677-45667678	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs111662168	chr17:45667719-45667720	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs111448535	chr17:45667745-45667746	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs113662095	chr17:45667764-45667765	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs187493853	chr17:45667810-45667811	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs59183684	chr17:45667823-45667824	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs142298832	chr17:45667833-45667834	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs5011809	chr17:45667877-45667878	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs566724739	chr17:45667888-45667889	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs535825101	chr17:45667947-45667948	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs555827224	chr17:45667957-45667958	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs569529500	chr17:45667963-45667964	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs2644324	chr17:45667991-45667992	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs148008304	chr17:45668041-45668042	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs375111669	chr17:45668054-45668055	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs370141044	chr17:45668060-45668061	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs200948229	chr17:45668075-45668076	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs376523771	chr17:45668087-45668088	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:116)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Melanoma	18172304	CNVD
Moyamoya disease	22323933	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ovarian cancer	21781307	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell lymphomas	19863542	CNVD
Cancer	16751803	CNVD
Chordoma	21602918	CNVD
Neurofibromatosis	20686819	CNVD
Peripheral nerve sheath tumors	20686819	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	17897457	CNVD
Neuroblastoma	17327916	CNVD
Breast cancer	21264507	CNVD
Endometrial cancer	22040021	CNVD
Neuroblastoma	21484798	CNVD
Breast cancer	22028636	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute myeloid leukemia	20724749	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Gastric cancer	17167181	CNVD
Breast cancer	19287154	CNVD
Leukemia	20874852	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Neuroblastoma	18664255	CNVD
Neuroblastoma	17533364	CNVD
Human rectal carcinomas	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Breast cancer	17457667	CNVD
Breast cancer	16951389	CNVD
Basal cell lymphoma	17053054	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22048815	CNVD
Breast cancer	17603634	CNVD
Follicular lymphoma	20505157	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	20953835	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
TAR Syndrome	17847015	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	17850661	CNVD
Breast cancer	19261255	CNVD
Lung cancer	16773561	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Basal-like breast cancer	18066063	CNVD
Breast cancer	20031965	CNVD
Colorectal cancer	19287155	CNVD
Hereditary breast	19566914	CNVD
Ovarian cancer	19047089	CNVD
Ovarian cancer	19566914	CNVD
Triple-negative breast cancer	18950515	CNVD
Breast cancer	16846527	CNVD
Bladder cancer	21909424	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	18628472	CNVD
Glioblastoma multiforme	18628472	CNVD
Leukemia	18628472	CNVD
Acute myeloid leukemia	21251322	CNVD
Ewing''s sarcoma	22429812	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	17217626	CNVD
Non-syndromic sensorineural hearing loss	21084979	CNVD
Autism	22817714	CNVD
Breast cancer	20409316	CNVD
Cancer	17160897	CNVD
Frontotemporal lobar degeneration	19640594	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21509527	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD

Chromatin state (count:238 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45610000-45670600	Weak transcription	Lung	lung
2	chr17:45610000-45670600	Weak transcription	Pancreas	Pancrea
3	chr17:45610000-45676800	Weak transcription	Ovary	ovary
4	chr17:45610200-45674200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr17:45610400-45670600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr17:45610600-45669200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr17:45610600-45670200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr17:45610800-45669000	Weak transcription	NH-A	brain
9	chr17:45611200-45674800	Weak transcription	Primary B cells from cord blood	blood
10	chr17:45616600-45674600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr17:45618600-45674600	Weak transcription	Fetal Brain Female	brain
12	chr17:45618800-45669200	Weak transcription	HUVEC	blood vessel
13	chr17:45619400-45667400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr17:45619400-45668200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr17:45622800-45669000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr17:45623600-45671000	Weak transcription	Esophagus	oesophagus
17	chr17:45625000-45668200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr17:45625200-45667200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr17:45625200-45670600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr17:45629600-45667400	Weak transcription	Left Ventricle	heart
21	chr17:45629800-45673400	Weak transcription	K562	blood
22	chr17:45635400-45670600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr17:45637400-45667200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr17:45637400-45669000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr17:45637400-45670600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr17:45637800-45678800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr17:45638000-45667400	Weak transcription	Primary T cells from cord blood	blood
28	chr17:45638000-45667400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr17:45638200-45667400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr17:45638800-45669200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr17:45639600-45675000	Weak transcription	Brain Angular Gyrus	brain
32	chr17:45639800-45676800	Weak transcription	Brain Anterior Caudate	brain
33	chr17:45641000-45678000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr17:45641400-45675000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr17:45644200-45675200	Weak transcription	GM12878-XiMat	blood
36	chr17:45644400-45683800	Weak transcription	Spleen	Spleen
37	chr17:45644600-45673400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr17:45644600-45673600	Weak transcription	Hela-S3	cervix
39	chr17:45645000-45673800	Weak transcription	HMEC	breast
40	chr17:45645600-45678200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr17:45647800-45667400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr17:45647800-45667400	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr17:45647800-45669200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr17:45647800-45677000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr17:45647800-45684800	Weak transcription	Gastric	stomach
46	chr17:45648000-45666800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr17:45648000-45667000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr17:45648000-45670600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr17:45648000-45670600	Weak transcription	Osteobl	bone
50	chr17:45648200-45667400	Weak transcription	Muscle Satellite Cultured Cells	--

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