Variant report

Variant	esv3438036
Chromosome Location	chr19:22095937-22098685
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF257-4	chr19:22097817-22098563	NONHSAT063754

Extended variants
information (count: 40 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571512546	chr19:22097828-22097829	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs191460764	chr19:22097873-22097874	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs529717863	chr19:22097893-22097894	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs537422239	chr19:22097923-22097924	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs183635763	chr19:22097935-22097936	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs188391360	chr19:22097969-22097970	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs181251164	chr19:22098010-22098011	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs549854628	chr19:22098016-22098017	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs1061777	chr19:22098027-22098028	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs375330632	chr19:22098030-22098031	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs141690831	chr19:22098051-22098052	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs74837198	chr19:22098052-22098053	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs114896744	chr19:22098076-22098077	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs558055942	chr19:22098114-22098115	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs185182996	chr19:22098121-22098122	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs190110519	chr19:22098122-22098123	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs562046231	chr19:22098147-22098148	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs150123998	chr19:22098148-22098149	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs538825439	chr19:22098169-22098170	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs541303523	chr19:22098170-22098171	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs559883503	chr19:22098190-22098191	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs117931984	chr19:22098191-22098192	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs117428838	chr19:22098198-22098199	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs138432661	chr19:22098199-22098200	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs563607303	chr19:22098222-22098223	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs182329485	chr19:22098240-22098241	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs549744668	chr19:22098258-22098259	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs142724150	chr19:22098278-22098279	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs757116	chr19:22098282-22098283	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs547302566	chr19:22098291-22098292	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs565904179	chr19:22098307-22098308	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs113039933	chr19:22098327-22098328	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs147349490	chr19:22098361-22098362	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs17448026	chr19:22098427-22098428	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs1634474	chr19:22098448-22098449	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs555722833	chr19:22098470-22098471	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs975712	chr19:22098471-22098472	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs541495057	chr19:22098503-22098504	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs369799375	chr19:22098506-22098507	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs114031959	chr19:22098551-22098552	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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