Variant report

Variant	esv3439229
Chromosome Location	chr3:80818862-80820710
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:80812088..80814411-chr3:80818425..80820438,3	K562	blood:
2	chr3:80820430..80822926-chr3:80823338..80825729,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ROBO2-4	chr3:80820447-80820621	XLOC_002716
2	lnc-ROBO2-4	chr3:80819879-80820106	XLOC_002716
3	lnc-ROBO2-4	chr3:80820521-80820621	XLOC_002716
4	lnc-ROBO2-4	chr3:80819921-80820106	XLOC_002716

Variant related genes	Relation type
ENSG00000242781	chromatin interactions

Extended variants
information (count: 100 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:100 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs549165311	chr3:80818877-80818878	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs562967773	chr3:80818905-80818906	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs79852055	chr3:80818910-80818911	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs551990687	chr3:80818916-80818917	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs571999943	chr3:80818924-80818925	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs534197805	chr3:80818941-80818942	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs189899555	chr3:80818954-80818955	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs138982193	chr3:80819019-80819020	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs115440430	chr3:80819057-80819058	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs181695115	chr3:80819074-80819075	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs569728761	chr3:80819097-80819098	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs184832370	chr3:80819112-80819113	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs538479246	chr3:80819141-80819142	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs554926023	chr3:80819151-80819152	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs372967326	chr3:80819166-80819167	Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs67610769	chr3:80819170-80819171	Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs540929669	chr3:80819201-80819202	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs141418011	chr3:80819210-80819211	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs62258009	chr3:80819219-80819220	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs543033762	chr3:80819232-80819233	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs577720707	chr3:80819237-80819238	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs543596330	chr3:80819241-80819242	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs189682920	chr3:80819244-80819245	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs376454686	chr3:80819277-80819278	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs150202582	chr3:80819303-80819304	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs531818832	chr3:80819316-80819317	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs370062638	chr3:80819328-80819329	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs565300552	chr3:80819335-80819336	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs138691876	chr3:80819398-80819399	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs149377473	chr3:80819496-80819497	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs567944478	chr3:80819497-80819498	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs529693613	chr3:80819499-80819500	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs549347083	chr3:80819531-80819532	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs542261232	chr3:80819546-80819547	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs557182345	chr3:80819549-80819550	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs56004469	chr3:80819571-80819572	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs56405458	chr3:80819573-80819574	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs55812690	chr3:80819578-80819579	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs376148504	chr3:80819586-80819587	Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs542279026	chr3:80819624-80819625	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs562029484	chr3:80819625-80819626	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs528014342	chr3:80819626-80819627	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs34582812	chr3:80819650-80819651	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs66919121	chr3:80819686-80819687	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs75220545	chr3:80819704-80819705	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs77601216	chr3:80819710-80819711	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs80140209	chr3:80819714-80819715	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs10617878	chr3:80819726-80819727	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs139715016	chr3:80819729-80819730	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs398062513	chr3:80819730-80819731	Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Autism	20808228	CNVD

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80816200-80822200	Active TSS	K562	blood
2	chr3:80816800-80820400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:80817000-80821200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr3:80817200-80819400	Active TSS	HUVEC	blood vessel
5	chr3:80817200-80819800	Active TSS	Placenta	Placenta
6	chr3:80817400-80820800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr3:80818000-80820800	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr3:80818200-80820600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:80818400-80820600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:80818400-80820600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:80818400-80820800	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr3:80818600-80820600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:80818600-80820800	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr3:80818800-80819200	Active TSS	Pancreas	Pancrea
15	chr3:80818800-80819200	Active TSS	Stomach Mucosa	stomach
16	chr3:80818800-80820200	Active TSS	Right Ventricle	heart
17	chr3:80818800-80820400	Active TSS	Fetal Stomach	stomach
18	chr3:80818800-80820400	Active TSS	Thymus	Thymus
19	chr3:80819000-80820200	Active TSS	Fetal Muscle Leg	muscle
20	chr3:80819000-80820400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr3:80819200-80820000	ZNF genes & repeats	Pancreas	Pancrea
22	chr3:80819200-80820600	Active TSS	Fetal Thymus	thymus
23	chr3:80819600-80820400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:80819800-80820400	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr3:80819800-80820400	Flanking Active TSS	Placenta	Placenta
26	chr3:80819800-80820400	Active TSS	Stomach Smooth Muscle	stomach
27	chr3:80819800-80820600	Active TSS	Adipose Nuclei	Adipose

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