Variant report
| Variant | esv3439305 |
|---|---|
| Chromosome Location | chr4:27730804-27732102 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-STIM2-7 | chr4:27731935-27732227 | NONHSAT095902 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs375014110 | chr4:27730848-27730849 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs182181008 | chr4:27730849-27730850 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs73803456 | chr4:27730854-27730855 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs537090352 | chr4:27730869-27730870 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs556776073 | chr4:27730878-27730879 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs28546903 | chr4:27730896-27730897 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 7 | rs141944843 | chr4:27730897-27730898 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs553171101 | chr4:27730918-27730919 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs573096735 | chr4:27730988-27730989 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs538743345 | chr4:27731971-27731972 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs548329350 | chr4:27731972-27731973 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs558746714 | chr4:27731979-27731980 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs568355216 | chr4:27732022-27732023 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 14 | rs13146193 | chr4:27732035-27732036 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 15 | rs538120190 | chr4:27732039-27732040 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 16 | rs80070200 | chr4:27732050-27732051 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs554600299 | chr4:27732066-27732067 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 18 | rs74847202 | chr4:27732069-27732070 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 19 | rs573965904 | chr4:27732074-27732075 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 20 | rs115481004 | chr4:27732075-27732076 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 21 | rs113652176 | chr4:27732087-27732088 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:54)
| Disease | PMID | Source |
|---|---|---|
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Cancer | 21637783 | CNVD |
| Melanoma | 21693616 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Chordoma | 21602918 | CNVD |
| HIV/AIDS | 22032296 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Autism | 22495311 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Chronic lymphocytic leukemia | 20421269 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Breast cancer | 21858162 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Cancer | 21183584 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Gastric cancer | 21586687 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Melanoma | 22183965 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Burkitt''s lymphoma | 20823134 | CNVD |
| Cancer | 22183965 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Melanoma | 18172304 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:27730600-27731000 | Enhancers | Liver | Liver |
