Variant report

Variant	esv3439689
Chromosome Location	chrX:73355891-73478378
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1123)
CpG islands
(count:489)
Chromatin interactive
region (count:44)
LncRNA
region (count:36)
Mature miRNA
region (count: 5)
miRNA target
sites (count:0)

(count:1123 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chrX:73469565-73470317	K562	blood:	n/a	chrX:73469673-73469689
2	ARID3A	chrX:73454791-73454930	K562	blood:	n/a	n/a
3	ARID3A	chrX:73471445-73471728	HepG2	liver:	n/a	n/a
4	ARID3A	chrX:73399042-73399564	HepG2	liver:	n/a	n/a
5	ARID3A	chrX:73461823-73462769	HepG2	liver:	n/a	n/a
6	ARID3A	chrX:73470956-73471060	HepG2	liver:	n/a	n/a
7	ATF1	chrX:73469773-73470116	K562	blood:	n/a	n/a
8	BACH1	chrX:73416807-73416951	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chrX:73470968-73471190	H1-hESC	embryonic stem cell:	n/a	n/a
10	BCL3	chrX:73456076-73456869	A549	lung:	n/a	n/a
11	BCL3	chrX:73422678-73424851	A549	lung:	n/a	n/a
12	BHLHE40	chrX:73462013-73462242	HepG2	liver:	n/a	n/a
13	BRCA1	chrX:73446331-73446406	Hela-S3	cervix:	n/a	n/a
14	CBX3	chrX:73466329-73466820	HCT-116	colon:	n/a	n/a
15	CBX3	chrX:73469748-73470037	K562	blood:	n/a	n/a
16	CEBPB	chrX:73404212-73404407	HepG2	liver:	n/a	chrX:73404339-73404350
17	CEBPB	chrX:73449943-73450272	Hela-S3	cervix:	n/a	n/a
18	CEBPB	chrX:73439723-73440008	Hela-S3	cervix:	n/a	chrX:73439869-73439880 chrX:73439869-73439882 chrX:73439869-73439882 chrX:73439912-73439923 chrX:73439871-73439882
19	CEBPB	chrX:73457978-73458308	HepG2	liver:	n/a	chrX:73458128-73458139 chrX:73458085-73458098 chrX:73458128-73458141
20	CEBPB	chrX:73461949-73462298	HepG2	liver:	n/a	n/a
21	CEBPB	chrX:73451969-73452236	IMR90	lung:	n/a	n/a
22	CEBPB	chrX:73466389-73466792	Hela-S3	cervix:	n/a	n/a
23	CEBPB	chrX:73439742-73440033	A549	lung:	n/a	chrX:73439869-73439880 chrX:73439869-73439882 chrX:73439869-73439882 chrX:73439912-73439923 chrX:73439871-73439882
24	CEBPB	chrX:73452736-73453078	A549	lung:	n/a	chrX:73452874-73452887
25	CEBPB	chrX:73466428-73466702	HepG2	liver:	n/a	n/a
26	CEBPB	chrX:73439725-73440030	HepG2	liver:	n/a	chrX:73439869-73439880 chrX:73439869-73439882 chrX:73439869-73439882 chrX:73439912-73439923 chrX:73439871-73439882
27	CEBPB	chrX:73470782-73471351	A549	lung:	n/a	n/a
28	CEBPB	chrX:73452723-73453108	Hela-S3	cervix:	n/a	chrX:73452874-73452887
29	CEBPB	chrX:73471005-73471317	H1-hESC	embryonic stem cell:	n/a	n/a
30	CEBPB	chrX:73461976-73462315	Hela-S3	cervix:	n/a	n/a
31	CEBPB	chrX:73466392-73466778	IMR90	lung:	n/a	n/a
32	CEBPB	chrX:73449960-73450235	A549	lung:	n/a	n/a
33	CEBPB	chrX:73452771-73453057	K562	blood:	n/a	chrX:73452874-73452887
34	CEBPB	chrX:73356969-73357240	IMR90	lung:	n/a	n/a
35	CEBPB	chrX:73457982-73458229	K562	blood:	n/a	chrX:73458128-73458139 chrX:73458085-73458098 chrX:73458128-73458141
36	CEBPB	chrX:73466442-73466742	K562	blood:	n/a	n/a
37	CEBPB	chrX:73471057-73471173	Hela-S3	cervix:	n/a	n/a
38	CEBPB	chrX:73470914-73471190	K562	blood:	n/a	n/a
39	CEBPB	chrX:73466239-73466802	HCT-116	colon:	n/a	n/a
40	CEBPB	chrX:73457961-73458304	IMR90	lung:	n/a	chrX:73458128-73458139 chrX:73458085-73458098 chrX:73458128-73458141
41	CEBPB	chrX:73470842-73471149	HepG2	liver:	n/a	n/a
42	CEBPB	chrX:73450002-73450266	K562	blood:	n/a	n/a
43	CEBPB	chrX:73449956-73450250	IMR90	lung:	n/a	n/a
44	CEBPB	chrX:73380489-73380775	A549	lung:	n/a	n/a
45	CEBPB	chrX:73439731-73440039	IMR90	lung:	n/a	chrX:73439869-73439880 chrX:73439869-73439882 chrX:73439869-73439882 chrX:73439912-73439923 chrX:73439871-73439882
46	CEBPB	chrX:73470840-73471226	A549	lung:	n/a	n/a
47	CEBPB	chrX:73461927-73462162	IMR90	lung:	n/a	n/a
48	CEBPB	chrX:73470838-73471241	A549	lung:	n/a	n/a
49	CEBPB	chrX:73466387-73466771	A549	lung:	n/a	n/a
50	CEBPB	chrX:73357055-73357174	A549	lung:	n/a	n/a

(count:489 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chrX:73439721-73439771	GM12878	blood:	n/a
2	chrX:73439721-73439771	GM12878	blood:	n/a
3	chrX:73438372-73438422	HCF	heart:	n/a
4	chrX:73439721-73439771	GM12892	blood:	n/a
5	chrX:73438541-73438591	HEK293	kidney:	embryo
6	chrX:73438387-73438437	HMEC	breast:	n/a
7	chrX:73437943-73437993	HEK293	kidney:	embryo
8	chrX:73438975-73439025	Hepatocyte	liver:	n/a
9	chrX:73438541-73438591	HCF	heart:	n/a
10	chrX:73438372-73438422	K562	blood:	n/a
11	chrX:73437943-73437993	RPTEC	kidney:	n/a
12	chrX:73439721-73439771	HCT-116	colon:	n/a
13	chrX:73438541-73438591	HNPCEpiC	eye:	n/a
14	chrX:73439472-73439522	HRCEpiC	kidney:	n/a
15	chrX:73438372-73438422	Caco-2	colon:	n/a
16	chrX:73439472-73439522	HNPCEpiC	eye:	n/a
17	chrX:73438541-73438591	AG04450	lung:	fetal
18	chrX:73439721-73439771	ProgFib	skin:	n/a
19	chrX:73438387-73438437	H1-hESC	embryonic stem cell:	embryo
20	chrX:73437943-73437993	IMR90	lung:	fetal
21	chrX:73438299-73438349	AG09319	gingival:	n/a
22	chrX:73438975-73439025	GM19239	blood:	n/a
23	chrX:73438299-73438349	K562	blood:	n/a
24	chrX:73439472-73439522	SAEC	small airway:	n/a
25	chrX:73438975-73439025	HAEpiC	amniotic membrane:	n/a
26	chrX:73438387-73438437	AoSMC	blood vessel:	n/a
27	chrX:73437943-73437993	AG04449	skin:	fetal
28	chrX:73438541-73438591	HPAEpiC	pulmonary alveolar:	n/a
29	chrX:73438387-73438437	HCF	heart:	n/a
30	chrX:73438372-73438422	PANC-1	pancreas:	n/a
31	chrX:73438975-73439025	T-47D	breast:	n/a
32	chrX:73438299-73438349	LNCaP	prostate:	n/a
33	chrX:73438299-73438349	GM12891	blood:	n/a
34	chrX:73439472-73439522	HPAEpiC	pulmonary alveolar:	n/a
35	chrX:73439472-73439522	H1-hESC	embryonic stem cell:	embryo
36	chrX:73439721-73439771	HCF	heart:	n/a
37	chrX:73438299-73438349	HEK293	kidney:	embryo
38	chrX:73438975-73439025	HepG2	liver:	n/a
39	chrX:73437943-73437993	T-47D	breast:	n/a
40	chrX:73439721-73439771	NHBE	bronchial:	n/a
41	chrX:73438387-73438437	HCT-116	colon:	n/a
42	chrX:73438541-73438591	HRE	kidney:	n/a
43	chrX:73437943-73437993	PrEC	prostate:	n/a
44	chrX:73438541-73438591	ECC-1	luminal epithelium:	n/a
45	chrX:73439472-73439522	MCF-7	breast:	n/a
46	chrX:73438372-73438422	SK-N-MC	brain:	n/a
47	chrX:73439472-73439522	NH-A	brain:	n/a
48	chrX:73438541-73438591	BE2_C	brain:	n/a
49	chrX:73439721-73439771	AG09309	skin:	n/a
50	chrX:73439472-73439522	GM06990	blood:	n/a

(count:44 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:73470991..73473301-chrX:73476690..73478741,2	K562	blood:
2	chrX:73439941..73441976-chrX:73442908..73445239,2	MCF-7	breast:
3	chrX:73364112..73366727-chrX:73370780..73373486,2	MCF-7	breast:
4	chrX:73451483..73454755-chrX:73508883..73513622,4	K562	blood:
5	chrX:73438124..73441079-chrX:73441174..73442680,2	MCF-7	breast:
6	chrX:73431631..73436850-chrX:73438454..73440647,4	K562	blood:
7	chrX:73471148..73473031-chrX:73473146..73475452,2	MCF-7	breast:
8	chrX:73472695..73475184-chrX:73510690..73513347,2	K562	blood:
9	chrX:73463427..73466391-chrX:73467746..73470173,4	K562	blood:
10	chrX:73449261..73451326-chrX:73454079..73456731,2	K562	blood:
11	chrX:73453195..73455744-chrX:73510481..73513016,2	K562	blood:
12	chrX:73470991..73473301-chrX:73476690..73478741,2	K562	blood:
13	chrX:73432716..73434685-chrX:73438454..73440502,3	K562	blood:
14	chrX:73439941..73441976-chrX:73442908..73445239,2	MCF-7	breast:
15	chrX:73450012..73452116-chrX:73470382..73471988,2	MCF-7	breast:
16	chrX:73459198..73461254-chrX:73465457..73467337,2	MCF-7	breast:
17	chrX:73071185..73073181-chrX:73451938..73454790,2	K562	blood:
18	chrX:73454081..73455981-chrX:73462613..73464637,2	MCF-7	breast:
19	chrX:73453113..73456402-chrX:73459511..73463565,6	K562	blood:
20	chrX:73364112..73366727-chrX:73370780..73373486,2	MCF-7	breast:
21	chrX:73462425..73464927-chrX:73468268..73470497,2	K562	blood:
22	chrX:73420710..73422994-chrX:73423909..73426337,2	K562	blood:
23	chrX:73459198..73461254-chrX:73465457..73467337,2	MCF-7	breast:
24	chrX:73452586..73454314-chrX:73457226..73459047,2	K562	blood:
25	chrX:73471148..73473031-chrX:73473146..73475452,2	MCF-7	breast:
26	chrX:73422460..73424132-chrX:73450105..73451728,2	K562	blood:
27	chrX:73466551..73468517-chrX:73468678..73471549,2	MCF-7	breast:
28	chrX:73419504..73422436-chrX:73510769..73513232,2	MCF-7	breast:
29	chrX:73463427..73466391-chrX:73467746..73470173,4	K562	blood:
30	chrX:73450012..73452116-chrX:73470382..73471988,2	MCF-7	breast:
31	chrX:73421402..73424298-chrX:73424887..73427787,2	MCF-7	breast:
32	chrX:73458948..73464025-chrX:73511011..73513080,5	MCF-7	breast:
33	chrX:73449261..73451326-chrX:73454079..73456731,2	K562	blood:
34	chrX:73436208..73438055-chrX:73439676..73442053,2	MCF-7	breast:
35	chrX:73467496..73469673-chrX:73471709..73474211,2	MCF-7	breast:
36	chrX:73451919..73454615-chrX:73459511..73462167,3	K562	blood:
37	chrX:73467496..73469673-chrX:73471709..73474211,2	MCF-7	breast:
38	chrX:73422222..73423835-chrX:73438962..73441930,2	K562	blood:
39	chrX:73469769..73471733-chrX:73510624..73512329,3	K562	blood:
40	chrX:73436208..73438055-chrX:73439676..73442053,2	MCF-7	breast:
41	chrX:73466551..73468517-chrX:73468678..73471549,2	MCF-7	breast:
42	chrX:73471330..73474644-chrX:73483362..73486619,4	K562	blood:
43	chrX:73452486..73453346-chrX:73544624..73545540,2	K562	blood:
44	chrX:73452586..73454314-chrX:73457226..73459047,2	K562	blood:

(count:36 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RLIM-2	chrX:73428729-73428911	NONHSAT137603
2	lnc-RLIM-2	chrX:73436901-73467758	NONHSAT137611
3	lnc-RLIM-2	chrX:73418262-73418408	NONHSAT137603
4	lnc-RLIM-2	chrX:73417491-73417645	NONHSAT137601
5	lnc-ZCCHC13-3	chrX:73463465-73465515	NONHSAT137621
6	lnc-RLIM-2	chrX:73417021-73417054	NONHSAT137604
7	lnc-ZCCHC13-5	chrX:73447848-73449246	NONHSAT137618
8	lnc-RLIM-2	chrX:73428318-73428635	NONHSAT137604
9	lnc-RLIM-2	chrX:73418262-73418408	NONHSAT137598
10	lnc-RLIM-2	chrX:73414934-73417054	NONHSAT137601
11	lnc-ZCCHC13-2	chrX:73469530-73472333	NONHSAT137623
12	lnc-RLIM-2	chrX:73467699-73467758	ENSG00000230590
13	lnc-ZCCHC13-11	chrX:73403050-73405346	l_3935_chrX:73402804-73405346
14	lnc-ZCCHC13-4	chrX:73453739-73457272	NONHSAT137619
15	lnc-ZCCHC13-8	chrX:73429038-73436714	NONHSAT137609
16	lnc-RLIM-2	chrX:73418262-73418408	NONHSAT137604
17	lnc-ZCCHC13-9	chrX:73416216-73417692	NONHSAT137602
18	lnc-ZCCHC13-6	chrX:73439563-73441456	NONHSAT137617
19	lnc-RLIM-2	chrX:73421303-73421422	NONHSAT137605
20	lnc-RLIM-2	chrX:73384424-73384483	NONHSAT137598
21	lnc-ZCCHC13-11	chrX:73402805-73402903	l_3935_chrX:73402804-73405346
22	lnc-RLIM-2	chrX:73428987-73429160	NONHSAT137601
23	lnc-RLIM-2	chrX:73429912-73430087	NONHSAT137598
24	lnc-ZCCHC13-6	chrX:73438472-73439552	NONHSAT137617
25	lnc-RLIM-2	chrX:73425037-73428011	NONHSAT137608
26	lnc-RLIM-2	chrX:73418265-73418408	NONHSAT137605
27	lnc-RLIM-2	chrX:73417491-73417645	NONHSAT137603
28	lnc-RLIM-2	chrX:73418262-73418408	NONHSAT137601
29	lnc-RLIM-2	chrX:73410902-73410970	NONHSAT137598
30	lnc-RLIM-2	chrX:73416954-73417054	NONHSAT137598
31	lnc-RLIM-2	chrX:73416961-73417054	NONHSAT137603
32	lnc-RLIM-2	chrX:73417491-73417645	NONHSAT137598
33	lnc-RLIM-2	chrX:73462445-73462736	NONHSAT137620
34	lnc-RLIM-2	chrX:73417491-73417645	NONHSAT137604
35	lnc-RLIM-2	chrX:73429811-73433495	ENSG00000271533.1
36	lnc-ZCCHC13-7	chrX:73436907-73437903	NONHSAT137612

miRNA name	Chromosome Location	mirBase accession
hsa-miR-374c-3p	chrX:73438422-73438443	MIMAT0022735
hsa-miR-421	chrX:73438227-73438249	MIMAT0003339
hsa-miR-374c-5p	chrX:73438396-73438417	MIMAT0018443
hsa-miR-374b-3p	chrX:73438392-73438413	MIMAT0004956
hsa-miR-374b-5p	chrX:73438422-73438443	MIMAT0004955

No data

Variant related genes	Relation type
MKRN5P	TF binding region
USMG5P1	TF binding region
MIR374B	TF binding region
ENSG00000271533	TF binding region
BMP2KL	TF binding region
ENSG00000271430	TF binding region
RAB11FIP1P1	TF binding region
DDX3YP2	TF binding region
RN7SL648P	TF binding region
MIR421	TF binding region
MKRN5P	CpG island
USMG5P1	CpG island
MIR374B	CpG island
ENSG00000271533	CpG island
BMP2KL	CpG island
ENSG00000271430	CpG island
RAB11FIP1P1	CpG island
DDX3YP2	CpG island
RN7SL648P	CpG island
MIR421	CpG island
ENSG00000265727	chromatin interactions
ENSG00000271533	chromatin interactions
ENSG00000229807	chromatin interactions
ENSG00000271430	chromatin interactions
ENSG00000212027	chromatin interactions
ENSG00000228492	chromatin interactions
ENSG00000230590	chromatin interactions
ENSG00000202566	chromatin interactions
ZFP36L2	Mature miRNA region
CNOT1	Mature miRNA region
AP3B1	Mature miRNA region
TACC1	Mature miRNA region
ADD3	Mature miRNA region
ACOT9	Mature miRNA region
SLC11A2	Mature miRNA region
TAF9	Mature miRNA region
DDX20	Mature miRNA region
CEBPB	Mature miRNA region
DNAJC16	Mature miRNA region
NKRF	Mature miRNA region
PRCC	Mature miRNA region
HSP90AA1	Mature miRNA region
CMPK1	Mature miRNA region
SPTLC1	Mature miRNA region
OTUD1	Mature miRNA region
FYTTD1	Mature miRNA region
NRXN3	Mature miRNA region
NDC1	Mature miRNA region
KIAA0100	Mature miRNA region
GHITM	Mature miRNA region
HOXA5	Mature miRNA region
GFOD2	Mature miRNA region
ATM	Mature miRNA region
ZC3H7B	Mature miRNA region
CA13	Mature miRNA region
MCFD2	Mature miRNA region
TAF7	Mature miRNA region
NPM1	Mature miRNA region
RHOBTB2	Mature miRNA region
CDC37	Mature miRNA region
DNAJC27	Mature miRNA region
RBBP7	Mature miRNA region
HADHA	Mature miRNA region
FAT2	Mature miRNA region
REEP3	Mature miRNA region
NCAPG	Mature miRNA region
HSPA13	Mature miRNA region
INPP4A	Mature miRNA region
SEPT2	Mature miRNA region
SPECC1L	Mature miRNA region
MTHFD2	Mature miRNA region
ITPK1	Mature miRNA region
MIS18BP1	Mature miRNA region
RAPH1	Mature miRNA region
MRPL38	Mature miRNA region
GALNT7	Mature miRNA region
STRAP	Mature miRNA region
ATXN2L	Mature miRNA region
PARD6B	Mature miRNA region
RANBP2	Mature miRNA region
ZMYND8	Mature miRNA region
SENP7	Mature miRNA region
RPL18A	Mature miRNA region
MSL3	Mature miRNA region
COPA	Mature miRNA region
FAM172A	Mature miRNA region
TUBA1B	Mature miRNA region
FAM126A	Mature miRNA region
CTC1	Mature miRNA region
NR6A1	Mature miRNA region
HTT	Mature miRNA region
CMAS	Mature miRNA region
PPP1R13B	Mature miRNA region
RND3	Mature miRNA region
MEX3C	Mature miRNA region
LBR	Mature miRNA region
PSME1	Mature miRNA region
DDX39A	Mature miRNA region
MRPL19	Mature miRNA region
RHOU	Mature miRNA region
MAPK8	Mature miRNA region
PCNXL4	Mature miRNA region
PGS1	Mature miRNA region
FAM168B	Mature miRNA region
SREK1IP1	Mature miRNA region
LEPREL4	Mature miRNA region
ZBTB41	Mature miRNA region
COPRS	Mature miRNA region
HIST4H4	Mature miRNA region
CD276	Mature miRNA region
AFF4	Mature miRNA region
EIF4G2	Mature miRNA region
MAPK1IP1L	Mature miRNA region
EIF3K	Mature miRNA region
RRS1	Mature miRNA region
DEK	Mature miRNA region
SMCHD1	Mature miRNA region
RAB11FIP1	Mature miRNA region
ZSWIM6	Mature miRNA region
CCND1	Mature miRNA region
NR3C1	Mature miRNA region
PPP2CB	Mature miRNA region
ZNF175	Mature miRNA region
GCSH	Mature miRNA region
ZNF280C	Mature miRNA region
LIMS1	Mature miRNA region
FKBP8	Mature miRNA region
PAXBP1	Mature miRNA region
FAM76A	Mature miRNA region
KBTBD8	Mature miRNA region
RASAL1	Mature miRNA region
FAM160B1	Mature miRNA region
TMEM245	Mature miRNA region
RHOB	Mature miRNA region
NUP153	Mature miRNA region
PHLPP2	Mature miRNA region
FAM32A	Mature miRNA region
ZXDA	Mature miRNA region
DDX3X	Mature miRNA region
RASL10B	Mature miRNA region
CD46	Mature miRNA region
GAREML	Mature miRNA region
MAP3K8	Mature miRNA region
ZNF678	Mature miRNA region
RGMB	Mature miRNA region
CREBRF	Mature miRNA region
PPARGC1A	Mature miRNA region
BAMBI	Mature miRNA region
PQLC2	Mature miRNA region
VAPA	Mature miRNA region
SRP9	Mature miRNA region
RBMXL1	Mature miRNA region
AMZ2	Mature miRNA region
PARP10	Mature miRNA region
DOK4	Mature miRNA region
ATF2	Mature miRNA region
ATG2B	Mature miRNA region
NSL1	Mature miRNA region
RPL26L1	Mature miRNA region
SEMA3C	Mature miRNA region
SRSF7	Mature miRNA region
ATP6V0C	Mature miRNA region
SRPR	Mature miRNA region
TMEM109	Mature miRNA region
SFXN1	Mature miRNA region
EFCAB14	Mature miRNA region
RAB2B	Mature miRNA region
CDKN2B	Mature miRNA region
TSR1	Mature miRNA region
GRK6	Mature miRNA region
RNF138	Mature miRNA region
MINPP1	Mature miRNA region
MLLT11	Mature miRNA region
DFFB	Mature miRNA region
SLC25A6	Mature miRNA region
GABARAPL1	Mature miRNA region
GID8	Mature miRNA region
FZD8	Mature miRNA region
LIN7C	Mature miRNA region
CBX7	Mature miRNA region
RAB26	Mature miRNA region
RIF1	Mature miRNA region
AHNAK	Mature miRNA region
CREBZF	Mature miRNA region
LMCD1	Mature miRNA region
TRA2A	Mature miRNA region
NXPE3	Mature miRNA region
TPT1	Mature miRNA region
LRIG3	Mature miRNA region
TTC37	Mature miRNA region
CDC42SE2	Mature miRNA region
AFTPH	Mature miRNA region
FBXO11	Mature miRNA region
CCNI	Mature miRNA region
RPS10	Mature miRNA region
PELI1	Mature miRNA region
RPS18	Mature miRNA region
GID4	Mature miRNA region
PHKA1	Mature miRNA region
IRS2	Mature miRNA region
ATP6V1C1	Mature miRNA region
DUSP3	Mature miRNA region
CYSTM1	Mature miRNA region
RALGAPB	Mature miRNA region
RANBP6	Mature miRNA region
ISY1	Mature miRNA region
MIER3	Mature miRNA region
DUS3L	Mature miRNA region
NIPBL	Mature miRNA region
OSTM1	Mature miRNA region
SLC9A6	Mature miRNA region
RASSF5	Mature miRNA region
C1orf56	Mature miRNA region
SON	Mature miRNA region
USO1	Mature miRNA region
PRR7	Mature miRNA region
ZNF30	Mature miRNA region
TRIM27	Mature miRNA region
LARS2	Mature miRNA region
FAM122A	Mature miRNA region
CASP2	Mature miRNA region
EEF1A1	Mature miRNA region
MLXIP	Mature miRNA region
POLR2D	Mature miRNA region
CAP1	Mature miRNA region
SLIT1	Mature miRNA region
AGO1	Mature miRNA region
CEP57	Mature miRNA region
NAA16	Mature miRNA region
PAPD4	Mature miRNA region
NCDN	Mature miRNA region
EIF4A1	Mature miRNA region
SEC24A	miRNA target sites

Extended variants
information (count: 1544 )
Associated
traits (count: 50 )

Variant overlapped rSNPs/rCNVs (count:1544 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs55926619	chrX:73356018-73356019	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs139730373	chrX:73356209-73356210	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs567921307	chrX:73356222-73356223	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs55658528	chrX:73356239-73356240	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs150538722	chrX:73356398-73356399	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs139491423	chrX:73356427-73356428	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs55662826	chrX:73356575-73356576	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs375879428	chrX:73356660-73356661	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs145443409	chrX:73356711-73356712	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs564620358	chrX:73356783-73356784	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs369447404	chrX:73356885-73356886	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs141109971	chrX:73356886-73356887	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs374267992	chrX:73357082-73357083	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs192257784	chrX:73357211-73357212	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs147641219	chrX:73357566-73357567	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs182962552	chrX:73357632-73357633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs142212206	chrX:73357635-73357636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs187789111	chrX:73357702-73357703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs143105669	chrX:73357746-73357747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs6647039	chrX:73357775-73357776	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs192570302	chrX:73357835-73357836	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs199587845	chrX:73358102-73358103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs141953776	chrX:73358323-73358324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs145916847	chrX:73358335-73358336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs528984689	chrX:73358574-73358575	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs138456422	chrX:73358709-73358710	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs138504102	chrX:73358980-73358981	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs184375457	chrX:73359020-73359021	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs7061461	chrX:73359241-73359242	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs547221588	chrX:73359298-73359299	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs149615520	chrX:73359405-73359406	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs5937264	chrX:73359492-73359493	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs193200787	chrX:73359515-73359516	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs529268093	chrX:73359615-73359616	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs184707174	chrX:73359655-73359656	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs68174254	chrX:73359691-73359692	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs373307071	chrX:73359696-73359697	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs35789980	chrX:73359967-73359968	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs561310090	chrX:73359968-73359969	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs367691269	chrX:73359981-73359982	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs397896487	chrX:73359982-73359983	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs397895937	chrX:73359983-73359984	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs148642407	chrX:73360400-73360401	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs111487541	chrX:73360554-73360555	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs531828748	chrX:73360562-73360563	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs189971446	chrX:73360631-73360632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs180773527	chrX:73360687-73360688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs185156928	chrX:73360788-73360789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs200349815	chrX:73360814-73360815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs189183330	chrX:73360863-73360864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:50)

Disease	PMID	Source
Intellectual disability	23615299	CNVD
Neuroblastoma	18923191	CNVD
Burkitt''s lymphoma	20823134	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Astrocytoma	17387387	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	21979893	CNVD
Schizophrenia	23904455	CNVD
Olfactory neuroblastoma	18408657	CNVD
infertile	22614455	CNVD
Acute myeloid leukemia	20729466	CNVD
Glioblastoma multiforme	22286061	CNVD
Autism	22495311	CNVD
Cancer	20581869	CNVD
Multiple myeloma	20724749	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Follicular lymphoma	20505157	CNVD
primary effusion lymphomas	17116491	CNVD
Testicular germ cell tumor	18059402	CNVD
Testicular cancer	18059402	CNVD
Seminomas	18059402	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	22429812	CNVD
Cancer	16751803	CNVD
Mental retardation	20877625	CNVD
brachycephaly	20877625	CNVD
epicanthic folds	20877625	CNVD
Lujan-Fryns syndrom	21572526	CNVD
Opitz-Kaveggia syndrome	21572526	CNVD
Cerebellar atrophy	21569638	CNVD
X-linked sideroblastic anemia	21569638	CNVD
Mental retardation	21572526	CNVD
ATR-X Syndrome	22470819	CNVD
Breast cancer	21611746	CNVD
Breast cancer	19602461	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1615 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73345800-73360200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chrX:73350000-73360200	Weak transcription	Fetal Intestine Small	intestine
3	chrX:73353400-73361600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chrX:73355000-73357600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chrX:73358400-73360400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
6	chrX:73360200-73360400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chrX:73360200-73360400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
8	chrX:73360200-73360400	Bivalent Enhancer	Lung	lung
9	chrX:73360200-73360600	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chrX:73360400-73360600	Enhancers	Lung	lung
11	chrX:73360400-73366400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chrX:73360400-73381200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chrX:73360600-73366800	Weak transcription	Fetal Intestine Small	intestine
14	chrX:73366200-73367000	Enhancers	Gastric	stomach
15	chrX:73366200-73367200	ZNF genes & repeats	Fetal Stomach	stomach
16	chrX:73366800-73367200	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chrX:73367000-73383600	Weak transcription	Gastric	stomach
18	chrX:73367200-73367600	Weak transcription	Fetal Intestine Small	intestine
19	chrX:73367200-73370200	Weak transcription	Fetal Stomach	stomach
20	chrX:73370800-73371000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
21	chrX:73371000-73372000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chrX:73373400-73381400	Weak transcription	Fetal Stomach	stomach
23	chrX:73376800-73377000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chrX:73377600-73381400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chrX:73378000-73380600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chrX:73378200-73380800	Weak transcription	Adipose Nuclei	Adipose
27	chrX:73379000-73388400	Weak transcription	Fetal Intestine Small	intestine
28	chrX:73379200-73380800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chrX:73379200-73380800	Weak transcription	Fetal Intestine Large	intestine
30	chrX:73379400-73381400	Weak transcription	Spleen	Spleen
31	chrX:73379600-73381400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chrX:73379600-73381600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chrX:73379800-73394800	Weak transcription	Aorta	Aorta
34	chrX:73380000-73382600	Weak transcription	Brain Cingulate Gyrus	brain
35	chrX:73380000-73385200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chrX:73380200-73382600	Weak transcription	Brain Hippocampus Middle	brain
37	chrX:73380200-73382600	Weak transcription	Pancreas	Pancrea
38	chrX:73380400-73382000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chrX:73380400-73383000	Weak transcription	Duodenum Mucosa	Duodenum
40	chrX:73380600-73382000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chrX:73380600-73383000	Weak transcription	Esophagus	oesophagus
42	chrX:73380800-73381000	Enhancers	Right Ventricle	heart
43	chrX:73380800-73381600	Enhancers	Left Ventricle	heart
44	chrX:73380800-73382000	Strong transcription	Adipose Nuclei	Adipose
45	chrX:73380800-73382000	Strong transcription	Fetal Intestine Large	intestine
46	chrX:73380800-73382400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chrX:73381000-73381200	Bivalent Enhancer	Fetal Muscle Leg	muscle
48	chrX:73381000-73382000	Strong transcription	Fetal Brain Female	brain
49	chrX:73381000-73382000	Weak transcription	Placenta	Placenta
50	chrX:73381000-73389800	Weak transcription	Ovary	ovary

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