Variant report

Variant	esv3440
Chromosome Location	chr10:39096359-39101600
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 925 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:925 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111208643	chr10:39096369-39096370	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs375901935	chr10:39096394-39096395	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs111217074	chr10:39096405-39096406	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs202188200	chr10:39096407-39096408	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs547852225	chr10:39096418-39096419	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs555785194	chr10:39096451-39096452	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs575623787	chr10:39096453-39096454	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs544812189	chr10:39096459-39096460	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs191258927	chr10:39096471-39096472	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs564971385	chr10:39096473-39096474	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs533384079	chr10:39096474-39096475	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs369650062	chr10:39096475-39096476	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs62637308	chr10:39096479-39096480	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560778648	chr10:39096493-39096494	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs529566846	chr10:39096497-39096498	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs61840079	chr10:39096503-39096504	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs61840080	chr10:39096508-39096509	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs2445671	chr10:39096513-39096514	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs61840081	chr10:39096523-39096524	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs112281929	chr10:39096528-39096529	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs113927956	chr10:39096549-39096550	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs200672276	chr10:39096551-39096552	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs201150150	chr10:39096555-39096556	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs373113060	chr10:39096559-39096560	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs571677209	chr10:39096574-39096575	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs533756882	chr10:39096578-39096579	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs183746027	chr10:39096583-39096584	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs553503470	chr10:39096589-39096590	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs367881956	chr10:39096605-39096606	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs536181023	chr10:39096607-39096608	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs138700991	chr10:39096618-39096619	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs112692593	chr10:39096628-39096629	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs76146420	chr10:39096633-39096634	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs145576075	chr10:39096637-39096638	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs76921677	chr10:39096638-39096639	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs75815804	chr10:39096644-39096645	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs575983583	chr10:39096647-39096648	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs544961121	chr10:39096649-39096650	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs199707238	chr10:39096650-39096651	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs61840082	chr10:39096652-39096653	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs76165422	chr10:39096657-39096658	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs61840083	chr10:39096666-39096667	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs558385397	chr10:39096667-39096668	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs79743655	chr10:39096668-39096669	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs61840084	chr10:39096672-39096673	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs79062117	chr10:39096675-39096676	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs572068602	chr10:39096677-39096678	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs76599570	chr10:39096678-39096679	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs539176203	chr10:39096679-39096680	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs111551725	chr10:39096680-39096681	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39097200	ZNF genes & repeats	Fetal Heart	heart
3	chr10:39076600-39099000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
4	chr10:39076600-39100800	ZNF genes & repeats	Brain Substantia Nigra	brain
5	chr10:39076600-39101000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:39076600-39101400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:39076600-39101800	ZNF genes & repeats	Colonic Mucosa	Colon
8	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
9	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
10	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
11	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
13	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
14	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
16	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
18	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
23	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
24	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
25	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
26	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
28	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
29	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
30	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
31	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
32	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
33	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
34	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
35	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
36	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
37	chr10:39076800-39098800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:39076800-39111400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
39	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
40	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
41	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
42	chr10:39082000-39097600	ZNF genes & repeats	HepG2	liver
43	chr10:39084400-39099600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:39090200-39100000	ZNF genes & repeats	K562	blood
45	chr10:39090200-39101800	ZNF genes & repeats	Brain Angular Gyrus	brain
46	chr10:39092200-39099200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:39092400-39101800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
48	chr10:39092600-39099000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
49	chr10:39093800-39097000	ZNF genes & repeats	HMEC	breast
50	chr10:39093800-39097200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood

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