Variant report

Variant	esv3440057
Chromosome Location	chr13:88996576-88999124
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-20	chr13:88998946-88999466	NONHSAT034612

Extended variants
information (count: 109 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:109 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372117489	chr13:88997003-88997004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs183551062	chr13:88997006-88997007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs534946967	chr13:88997018-88997019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs553703054	chr13:88997035-88997036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs578238824	chr13:88997036-88997037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs374803573	chr13:88997037-88997038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs540475314	chr13:88997038-88997039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs539352659	chr13:88997081-88997082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs141439651	chr13:88997082-88997083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs187797245	chr13:88997105-88997106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs370914339	chr13:88997119-88997120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs338743	chr13:88997136-88997137	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs192020505	chr13:88997140-88997141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572987064	chr13:88997157-88997158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs539992372	chr13:88997162-88997163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs368923309	chr13:88997171-88997172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs561549729	chr13:88997200-88997201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs564745628	chr13:88997207-88997208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs372262257	chr13:88997212-88997213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs147025068	chr13:88997221-88997222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs550485298	chr13:88997264-88997265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs563679468	chr13:88997268-88997269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs530844338	chr13:88997273-88997274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs549448043	chr13:88997293-88997294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs567703742	chr13:88997298-88997299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs535129238	chr13:88997337-88997338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs547177260	chr13:88997338-88997339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs571887510	chr13:88997362-88997363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs539315172	chr13:88997376-88997377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs183298316	chr13:88997383-88997384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs575165281	chr13:88997408-88997409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs9520309	chr13:88997437-88997438	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs554552467	chr13:88997446-88997447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs572809194	chr13:88997476-88997477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs111980121	chr13:88997492-88997493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs564709055	chr13:88997517-88997518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs188345224	chr13:88997521-88997522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201392892	chr13:88997536-88997537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs386773115	chr13:88997538-88997539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs115120017	chr13:88997539-88997540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs186800267	chr13:88997564-88997565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs113642307	chr13:88997592-88997593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs191269836	chr13:88997604-88997605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs561346709	chr13:88997609-88997610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs528565337	chr13:88997625-88997626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs547140228	chr13:88997627-88997628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs184809960	chr13:88997631-88997632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs189271667	chr13:88997685-88997686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs199964902	chr13:88997714-88997715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112967487	chr13:88997726-88997727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD
Non-small cell lung cancer	16651412	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88997000-89002000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:88998000-88998200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links