Variant report
Variant | esv3440063 |
---|---|
Chromosome Location | chr15:82616922-82619870 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3)
- CpG islands (count:61)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CTCF | chr15:82619677-82619746 | Spleen_OC | spleen: | n/a | n/a |
2 | EBF1 | chr15:82618527-82618777 | GM12878 | blood: | n/a | n/a |
3 | TCF3 | chr15:82618470-82618838 | GM12878 | blood: | n/a | chr15:82618600-82618613 chr15:82618598-82618608 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:82618004-82618054 | Caco-2 | colon: | n/a |
2 | chr15:82618004-82618054 | HL-60 | blood: | n/a |
3 | chr15:82618004-82618054 | MCF-7 | breast: | n/a |
4 | chr15:82618004-82618054 | A549 | lung: | n/a |
5 | chr15:82618004-82618054 | HepG2 | liver: | n/a |
6 | chr15:82618004-82618054 | NHDF-neo | bronchial: | n/a |
7 | chr15:82618004-82618054 | MCF10A-Er-Src | breast: | n/a |
8 | chr15:82618004-82618054 | K562 | blood: | n/a |
9 | chr15:82618004-82618054 | BJ | skin: | n/a |
10 | chr15:82618004-82618054 | AG10803 | skin: | n/a |
11 | chr15:82618004-82618054 | GM12878 | blood: | n/a |
12 | chr15:82618004-82618054 | IMR90 | lung: | fetal |
13 | chr15:82618004-82618054 | Jurkat | blood: | n/a |
14 | chr15:82618004-82618054 | HAEpiC | amniotic membrane: | n/a |
15 | chr15:82618004-82618054 | HPAEpiC | pulmonary alveolar: | n/a |
16 | chr15:82618004-82618054 | HRE | kidney: | n/a |
17 | chr15:82618004-82618054 | NHBE | bronchial: | n/a |
18 | chr15:82618004-82618054 | ovcar-3 | ovarian: | n/a |
19 | chr15:82618004-82618054 | HMEC | breast: | n/a |
20 | chr15:82618004-82618054 | SKMC | muscle: | n/a |
21 | chr15:82618004-82618054 | HCPEpiC | choroid plexus: | n/a |
22 | chr15:82618004-82618054 | CMK | blood: | n/a |
23 | chr15:82618004-82618054 | SK-N-SH | brain: | n/a |
24 | chr15:82618004-82618054 | HCT-116 | colon: | n/a |
25 | chr15:82618004-82618054 | PFSK-1 | brain: | n/a |
26 | chr15:82618004-82618054 | GM12892 | blood: | n/a |
27 | chr15:82618004-82618054 | GM06990 | blood: | n/a |
28 | chr15:82618004-82618054 | GM19239 | blood: | n/a |
29 | chr15:82618004-82618054 | HNPCEpiC | eye: | n/a |
30 | chr15:82618004-82618054 | AoSMC | blood vessel: | n/a |
31 | chr15:82618004-82618054 | AG04450 | lung: | fetal |
32 | chr15:82618004-82618054 | U87 | brain: | n/a |
33 | chr15:82618004-82618054 | H1-hESC | embryonic stem cell: | embryo |
34 | chr15:82618004-82618054 | SAEC | small airway: | n/a |
35 | chr15:82618004-82618054 | HEEpiC | esophagus: | n/a |
36 | chr15:82618004-82618054 | NT2-D1 | testis: | n/a |
37 | chr15:82618004-82618054 | HUVEC | blood vessel: | n/a |
38 | chr15:82618004-82618054 | PANC-1 | pancreas: | n/a |
39 | chr15:82618004-82618054 | HRPEpiC | eye: | n/a |
40 | chr15:82618004-82618054 | LNCaP | prostate: | n/a |
41 | chr15:82618004-82618054 | T-47D | breast: | n/a |
42 | chr15:82618004-82618054 | Hela-S3 | cervix: | n/a |
43 | chr15:82618004-82618054 | PrEC | prostate: | n/a |
44 | chr15:82618004-82618054 | NB4 | blood: | n/a |
45 | chr15:82618004-82618054 | ProgFib | skin: | n/a |
46 | chr15:82618004-82618054 | RPTEC | kidney: | n/a |
47 | chr15:82618004-82618054 | HCM | heart: | n/a |
48 | chr15:82618004-82618054 | HRCEpiC | kidney: | n/a |
49 | chr15:82618004-82618054 | GM12891 | blood: | n/a |
50 | chr15:82618004-82618054 | BE2_C | brain: | n/a |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ADAMTS7P1 | TF binding region |
ADAMTS7P1 | CpG island |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs62010094 | chr15:82618652-82618653 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs62010097 | chr15:82619739-82619740 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Ewing''s sarcoma | 21437220 | CNVD |
Schizophrenia | 19415332 | CNVD |
Breast cancer | 22522925 | CNVD |
Wilms tumour | 21544195 | CNVD |
cataract | 16735990 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Medulloblastoma | 21979893 | CNVD |
spastic paraplegia with thinning of corpus callosum | 19105190 | CNVD |
Schizophrenia | 21324950 | CNVD |
Astrocytoma | 17387387 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Disease | 21824424 | CNVD |
Melanoma | 18172304 | CNVD |
Gastric cancer | 17167181 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Multiple myeloma | 17550852 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Multiple myeloma | 20724749 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Prostate cancer | 18632612 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Cancer | 16751803 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Autism | 17322880 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Lung cancer | 18438408 | CNVD |
Papillary thyroid carcinoma | 22161024 | CNVD |
Autism | 21480499 | CNVD |
Breast cancer | 17603634 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Embryonal rhabdomyosarcoma | 16790082 | CNVD |
Esophageal adenocarcinoma | 18820669 | CNVD |
Sudden cardiac death | 19188705 | CNVD |
Breast cancer | 21990379 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Congenital diaphragmatic hernia | 21341218 | CNVD |
Adenocarcinoma | 19607727 | CNVD |
Squamous cell cancer | 19607727 | CNVD |
Congenital diaphragmatic hernia | 20921022 | CNVD |
abnormal development | 18461090 | CNVD |
Intellectual disability | 22102821 | CNVD |
renal disease | 17924346 | CNVD |
Breast cancer | 20409316 | CNVD |
Mental retardation | 17847001 | CNVD |
Breast cancer | 17133270 | CNVD |
Breast cancer | 21785460 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 21509527 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Schizophrenia | 20967226 | CNVD |
Williams Syndrome | 20824207 | CNVD |