Variant report

Variant	esv3440128
Chromosome Location	chr9:6412477-6415325
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:741)
CpG islands
(count:549)
Chromatin interactive
region (count:17)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:741 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr9:6412411-6413372	GM12878	blood:	n/a	n/a
2	ATF2	chr9:6412893-6413353	H1-hESC	embryonic stem cell:	n/a	n/a
3	ATF2	chr9:6412410-6413365	GM12878	blood:	n/a	n/a
4	ATF2	chr9:6412216-6412546	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr9:6412549-6413272	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr9:6413473-6413555	H1-hESC	embryonic stem cell:	n/a	n/a
7	BCL11A	chr9:6412796-6413030	GM12878	blood:	n/a	n/a
8	BCL11A	chr9:6412600-6413034	GM12878	blood:	n/a	n/a
9	BCL3	chr9:6412429-6413349	GM12878	blood:	n/a	chr9:6412547-6412560 chr9:6412552-6412565
10	BCLAF1	chr9:6412420-6413716	GM12878	blood:	n/a	chr9:6413655-6413664 chr9:6413653-6413666 chr9:6412547-6412560 chr9:6412552-6412565
11	BCLAF1	chr9:6412664-6413695	GM12878	blood:	n/a	chr9:6413655-6413664 chr9:6413653-6413666
12	BHLHE40	chr9:6412458-6413317	GM12878	blood:	n/a	chr9:6412580-6412596
13	BHLHE40	chr9:6412870-6413232	K562	blood:	n/a	n/a
14	BRCA1	chr9:6412858-6413427	Hela-S3	cervix:	n/a	n/a
15	BRCA1	chr9:6414116-6414547	H1-hESC	embryonic stem cell:	n/a	n/a
16	BRCA1	chr9:6412951-6413362	HepG2	liver:	n/a	n/a
17	BRCA1	chr9:6412740-6413428	GM12878	blood:	n/a	n/a
18	BRCA1	chr9:6412822-6413380	H1-hESC	embryonic stem cell:	n/a	n/a
19	CBX3	chr9:6412407-6413211	K562	blood:	n/a	n/a
20	CBX3	chr9:6412370-6412986	K562	blood:	n/a	n/a
21	CCNT2	chr9:6412510-6414194	K562	blood:	n/a	chr9:6413042-6413051
22	CEBPB	chr9:6412358-6413103	GM12878	blood:	n/a	n/a
23	CEBPB	chr9:6412803-6413372	Hela-S3	cervix:	n/a	n/a
24	CEBPB	chr9:6412834-6413160	K562	blood:	n/a	n/a
25	CEBPD	chr9:6413048-6413330	HepG2	liver:	n/a	n/a
26	CHD1	chr9:6413711-6414174	H1-hESC	embryonic stem cell:	n/a	n/a
27	CHD1	chr9:6412299-6412888	H1-hESC	embryonic stem cell:	n/a	n/a
28	CHD1	chr9:6412629-6414712	GM12878	blood:	n/a	n/a
29	CHD1	chr9:6414945-6415396	GM12878	blood:	n/a	n/a
30	CHD2	chr9:6412854-6413750	HepG2	liver:	n/a	n/a
31	CHD2	chr9:6412692-6413533	K562	blood:	n/a	n/a
32	CHD2	chr9:6412632-6414056	Hela-S3	cervix:	n/a	n/a
33	CHD2	chr9:6412457-6414120	GM12878	blood:	n/a	n/a
34	CHD2	chr9:6412339-6413710	H1-hESC	embryonic stem cell:	n/a	n/a
35	CREB1	chr9:6412472-6413731	GM12878	blood:	n/a	n/a
36	CREB1	chr9:6412834-6413426	A549	lung:	n/a	n/a
37	CREB1	chr9:6412878-6413399	H1-hESC	embryonic stem cell:	n/a	n/a
38	CTBP2	chr9:6412371-6413332	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr9:6412820-6412970	AG09319	gingival:	n/a	n/a
40	CTCF	chr9:6413560-6413710	HCPEpiC	choroid plexus:	n/a	n/a
41	CTCF	chr9:6412860-6413010	HPF	lung:	n/a	n/a
42	CTCF	chr9:6412680-6412830	HAc	cerebellar:	n/a	n/a
43	CTCF	chr9:6412840-6412990	HMF	breast:	n/a	n/a
44	CTCF	chr9:6412620-6412770	HRPEpiC	eye:	n/a	n/a
45	CTCF	chr9:6413600-6413750	SAEC	small airway:	n/a	n/a
46	CTCF	chr9:6413560-6413710	GM12864	blood:	n/a	n/a
47	CTCF	chr9:6413477-6413710	GM19238	blood:	n/a	n/a
48	CTCF	chr9:6413700-6413850	HepG2	liver:	n/a	n/a
49	CTCF	chr9:6413520-6413670	GM12865	blood:	n/a	n/a
50	CTCF	chr9:6412952-6413009	GM12891	blood:	n/a	n/a

(count:549 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:6414096-6414146	HCT-116	colon:	n/a
2	chr9:6412836-6412886	AG04450	lung:	fetal
3	chr9:6413045-6413095	HMEC	breast:	n/a
4	chr9:6413167-6413217	SKMC	muscle:	n/a
5	chr9:6412991-6413041	RPTEC	kidney:	n/a
6	chr9:6412836-6412886	SK-N-MC	brain:	n/a
7	chr9:6413852-6413902	ProgFib	skin:	n/a
8	chr9:6414096-6414146	Hela-S3	cervix:	n/a
9	chr9:6413852-6413902	NB4	blood:	n/a
10	chr9:6414194-6414244	CMK	blood:	n/a
11	chr9:6413544-6413594	NB4	blood:	n/a
12	chr9:6412886-6412936	U87	brain:	n/a
13	chr9:6413045-6413095	GM12878	blood:	n/a
14	chr9:6413852-6413902	AG04450	lung:	fetal
15	chr9:6412836-6412886	MCF-7	breast:	n/a
16	chr9:6413045-6413095	AG10803	skin:	n/a
17	chr9:6413045-6413095	HNPCEpiC	eye:	n/a
18	chr9:6412836-6412886	ProgFib	skin:	n/a
19	chr9:6413544-6413594	A549	lung:	n/a
20	chr9:6412991-6413041	Hepatocyte	liver:	n/a
21	chr9:6413045-6413095	SAEC	small airway:	n/a
22	chr9:6414194-6414244	HEEpiC	esophagus:	n/a
23	chr9:6412836-6412886	NHBE	bronchial:	n/a
24	chr9:6413045-6413095	HEEpiC	esophagus:	n/a
25	chr9:6413544-6413594	PANC-1	pancreas:	n/a
26	chr9:6413045-6413095	NB4	blood:	n/a
27	chr9:6413544-6413594	K562	blood:	n/a
28	chr9:6413544-6413594	PrEC	prostate:	n/a
29	chr9:6413544-6413594	CMK	blood:	n/a
30	chr9:6413852-6413902	HCT-116	colon:	n/a
31	chr9:6414096-6414146	HAEpiC	amniotic membrane:	n/a
32	chr9:6413167-6413217	Hela-S3	cervix:	n/a
33	chr9:6414096-6414146	HL-60	blood:	n/a
34	chr9:6414096-6414146	K562	blood:	n/a
35	chr9:6412991-6413041	NH-A	brain:	n/a
36	chr9:6413544-6413594	NH-A	brain:	n/a
37	chr9:6413045-6413095	HAEpiC	amniotic membrane:	n/a
38	chr9:6414194-6414244	PrEC	prostate:	n/a
39	chr9:6412836-6412886	T-47D	breast:	n/a
40	chr9:6413852-6413902	HEEpiC	esophagus:	n/a
41	chr9:6413045-6413095	SK-N-SH_RA	brain:	n/a
42	chr9:6413045-6413095	HCM	heart:	n/a
43	chr9:6412836-6412886	ovcar-3	ovarian:	n/a
44	chr9:6412886-6412936	H1-hESC	embryonic stem cell:	embryo
45	chr9:6413167-6413217	PANC-1	pancreas:	n/a
46	chr9:6412836-6412886	ECC-1	luminal epithelium:	n/a
47	chr9:6413167-6413217	A549	lung:	n/a
48	chr9:6414194-6414244	ProgFib	skin:	n/a
49	chr9:6412886-6412936	SAEC	small airway:	n/a
50	chr9:6413852-6413902	HL-60	blood:	n/a

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:47616230..47616761-chr9:6413307..6414303,2	NB4	blood:
2	chr15:44718353..44719694-chr9:6411917..6413110,3	NB4	blood:
3	chr2:85132788..85133313-chr9:6412396..6412970,2	NB4	blood:
4	chr11:64546386..64547209-chr9:6411955..6412774,2	NB4	blood:
5	chr9:6411580..6414419-chr9:6755713..6757647,2	K562	blood:
6	chr9:6415256..6417378-chr9:6441434..6444030,2	MCF-7	breast:
7	chr9:6412168..6415418-chr9:6418500..6425043,7	MCF-7	breast:
8	chr7:108210164..108210733-chr9:6413005..6413576,2	Hela-S3	cervix:
9	chr9:6412621..6414719-chr9:6496485..6499094,2	K562	blood:
10	chr1:94312260..94313044-chr9:6412226..6412915,2	NB4	blood:
11	chr9:6413231..6415998-chr9:6419721..6423966,4	MCF-7	breast:
12	chr9:6413251..6414875-chr9:6756450..6759044,2	K562	blood:
13	chr1:8021266..8021839-chr9:6413033..6413897,2	Hela-S3	cervix:
14	chr9:6410972..6413613-chr9:6564070..6565701,2	MCF-7	breast:
15	chr9:6413056..6413599-chrX:150565656..150566334,2	Hela-S3	cervix:
16	chr9:6411739..6415458-chr9:6420668..6426596,8	K562	blood:
17	chr9:6411889..6413422-chr9:6565833..6568598,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf38-1	chr9:6415145-6415563	ENSG00000233367.1
2	lnc-TPD52L3-2	chr9:6413777-6413911	NONHSAT130130

No data

Variant related genes	Relation type
UHRF2	TF binding region
UHRF2	CpG island
ENSG00000259595	chromatin interactions
ENSG00000177683	chromatin interactions
ENSG00000269038	chromatin interactions
ENSG00000116288	chromatin interactions
ENSG00000137770	chromatin interactions
ENSG00000107077	chromatin interactions
ENSG00000160131	chromatin interactions
ENSG00000137936	chromatin interactions
ENSG00000211575	chromatin interactions
ENSG00000128590	chromatin interactions
ENSG00000178445	chromatin interactions
ENSG00000142230	chromatin interactions
ENSG00000260464	chromatin interactions
ENSG00000252110	chromatin interactions
ENSG00000147854	chromatin interactions

Extended variants
information (count: 147 )
Associated
traits (count: 111 )

Variant overlapped rSNPs/rCNVs (count:147 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571219494	chr9:6412504-6412505	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
2	rs538751347	chr9:6412510-6412511	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
3	rs10283682	chr9:6412531-6412532	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs569476361	chr9:6412616-6412617	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
5	rs536942365	chr9:6412637-6412638	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
6	rs555002342	chr9:6412643-6412644	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
7	rs573176889	chr9:6412651-6412652	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
8	rs540298500	chr9:6412684-6412685	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
9	rs558933215	chr9:6412687-6412688	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
10	rs576892903	chr9:6412688-6412689	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
11	rs544311706	chr9:6412730-6412731	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
12	rs552004539	chr9:6412748-6412749	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
13	rs530666787	chr9:6412794-6412795	Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
14	rs542899724	chr9:6412804-6412805	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
15	rs561052975	chr9:6412903-6412904	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
16	rs528407133	chr9:6412914-6412915	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
17	rs546242131	chr9:6412940-6412941	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
18	rs201212995	chr9:6412951-6412952	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
19	rs397711607	chr9:6412952-6412953	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
20	rs397893297	chr9:6412953-6412954	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
21	rs201961543	chr9:6412954-6412955	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
22	rs113392041	chr9:6412969-6412970	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
23	rs532198120	chr9:6413005-6413006	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
24	rs10283728	chr9:6413017-6413018	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs569463884	chr9:6413029-6413030	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
26	rs536880108	chr9:6413039-6413040	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
27	rs555223782	chr9:6413047-6413048	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
28	rs567026816	chr9:6413092-6413093	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
29	rs34467386	chr9:6413107-6413108	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
30	rs368303908	chr9:6413111-6413112	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
31	rs534524612	chr9:6413141-6413142	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
32	rs558639767	chr9:6413146-6413147	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
33	rs34094286	chr9:6413190-6413191	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
34	rs576833044	chr9:6413209-6413210	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
35	rs544299262	chr9:6413234-6413235	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
36	rs200602206	chr9:6413250-6413251	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
37	rs575081540	chr9:6413283-6413284	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
38	rs542427605	chr9:6413292-6413293	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
39	rs561150084	chr9:6413324-6413325	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
40	rs528331990	chr9:6413366-6413367	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
41	rs540520681	chr9:6413371-6413372	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
42	rs564871012	chr9:6413373-6413374	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
43	rs532184223	chr9:6413375-6413376	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
44	rs550679172	chr9:6413377-6413378	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
45	rs562598186	chr9:6413381-6413382	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
46	rs529819110	chr9:6413397-6413398	Active TSS Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
47	rs548460330	chr9:6413403-6413404	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
48	rs567064255	chr9:6413425-6413426	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
49	rs201234807	chr9:6413449-6413450	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
50	rs552883388	chr9:6413450-6413451	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:111)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Dyslexia	22102821	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD

Chromatin state (count:392 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6410000-6412600	Enhancers	Primary hematopoietic stem cells	blood
2	chr9:6411800-6414200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr9:6411800-6414800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr9:6411800-6415200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:6411800-6415600	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr9:6412000-6414600	Active TSS	Brain Cingulate Gyrus	brain
7	chr9:6412200-6412600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:6412200-6412600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:6412200-6412600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr9:6412200-6412600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:6412200-6412600	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr9:6412200-6412600	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr9:6412200-6412600	Flanking Active TSS	Fetal Brain Female	brain
14	chr9:6412200-6412600	Flanking Active TSS	Fetal Intestine Small	intestine
15	chr9:6412200-6412600	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr9:6412200-6412800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:6412200-6412800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr9:6412200-6412800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr9:6412200-6412800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr9:6412200-6412800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:6412200-6412800	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr9:6412200-6412800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr9:6412200-6412800	Flanking Active TSS	Fetal Muscle Leg	muscle
24	chr9:6412200-6412800	Flanking Active TSS	Placenta Amnion	Placenta Amnion
25	chr9:6412200-6413000	Flanking Active TSS	Primary B cells from peripheral blood	blood
26	chr9:6412200-6413000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
27	chr9:6412200-6413000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:6412200-6413000	Flanking Active TSS	Fetal Muscle Trunk	muscle
29	chr9:6412200-6413000	Flanking Active TSS	Placenta	Placenta
30	chr9:6412200-6413000	Flanking Active TSS	Fetal Thymus	thymus
31	chr9:6412200-6413000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr9:6412200-6413000	Flanking Active TSS	Thymus	Thymus
33	chr9:6412200-6414200	Active TSS	H1 Cell Line	embryonic stem cell
34	chr9:6412200-6414200	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr9:6412200-6414200	Active TSS	Duodenum Mucosa	Duodenum
36	chr9:6412200-6414400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr9:6412200-6414400	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr9:6412200-6414400	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr9:6412200-6414600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr9:6412200-6414600	Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr9:6412200-6414600	Active TSS	Brain Substantia Nigra	brain
42	chr9:6412200-6414600	Active TSS	Colonic Mucosa	Colon
43	chr9:6412200-6414600	Active TSS	Colon Smooth Muscle	Colon
44	chr9:6412200-6414600	Active TSS	Fetal Heart	heart
45	chr9:6412200-6414600	Active TSS	Fetal Lung	lung
46	chr9:6412200-6414600	Active TSS	Rectal Smooth Muscle	rectum
47	chr9:6412200-6414600	Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr9:6412200-6414600	Active TSS	Osteobl	bone
49	chr9:6412200-6414800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr9:6412200-6414800	Active TSS	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links