Variant report

Variant	esv3440325
Chromosome Location	chr6:77526081-77527050
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576940547	chr6:77526096-77526097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs371552801	chr6:77526097-77526098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs201262736	chr6:77526098-77526099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201251148	chr6:77526099-77526100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs398110313	chr6:77526101-77526102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs202227558	chr6:77526102-77526103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs374644633	chr6:77526180-77526181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs541444459	chr6:77526181-77526182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs7751987	chr6:77526193-77526194	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs373421237	chr6:77526213-77526214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs573453549	chr6:77526290-77526291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs540564653	chr6:77526327-77526328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs565241678	chr6:77526349-77526350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs532541120	chr6:77526355-77526356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs111354517	chr6:77526403-77526404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs550777898	chr6:77526539-77526540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs559639468	chr6:77526551-77526552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562826460	chr6:77526568-77526569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs181259870	chr6:77526576-77526577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs377384103	chr6:77526582-77526583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs548290940	chr6:77526626-77526627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs566900779	chr6:77526660-77526661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs527697090	chr6:77526661-77526662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs535649758	chr6:77526687-77526688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs186868108	chr6:77526693-77526694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs570779643	chr6:77526715-77526716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs555098179	chr6:77526724-77526725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs79834115	chr6:77526739-77526740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs556357742	chr6:77526815-77526816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs149838005	chr6:77526824-77526825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs535582279	chr6:77526831-77526832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs73757999	chr6:77526832-77526833	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs571661481	chr6:77526860-77526861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs540678725	chr6:77526872-77526873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs541584449	chr6:77526931-77526932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs558791415	chr6:77526932-77526933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs191719907	chr6:77526942-77526943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs558792778	chr6:77526946-77526947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs577152861	chr6:77526974-77526975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs368630643	chr6:77527000-77527001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs145808733	chr6:77527003-77527004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs377483005	chr6:77527042-77527043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs9352394	chr6:77527049-77527050	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs184010630	chr6:77527050-77527051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77499600-77530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:77520400-77527200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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