Variant report
Variant | esv3440497 |
---|---|
Chromosome Location | chr3:34628848-34634846 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs113288154 | chr3:34633422-34633423 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs528482286 | chr3:34633426-34633427 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs149475195 | chr3:34633493-34633494 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs528593859 | chr3:34633494-34633495 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs1520623 | chr3:34633503-34633504 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs546843008 | chr3:34633515-34633516 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs35246836 | chr3:34633579-34633580 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs193106345 | chr3:34633580-34633581 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs532596072 | chr3:34633585-34633586 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs183512911 | chr3:34633634-34633635 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs9311061 | chr3:34633706-34633707 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
12 | rs368290395 | chr3:34633711-34633712 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs35334242 | chr3:34633712-34633713 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs397989168 | chr3:34633735-34633736 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs530903335 | chr3:34633808-34633809 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs145894134 | chr3:34633845-34633846 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs548173670 | chr3:34633868-34633869 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs566407012 | chr3:34633884-34633885 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs533907276 | chr3:34633887-34633888 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs116260260 | chr3:34633924-34633925 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs138602565 | chr3:34633933-34633934 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs575706641 | chr3:34633939-34633940 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs538075868 | chr3:34633952-34633953 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs1607770 | chr3:34633973-34633974 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
25 | rs142703190 | chr3:34633974-34633975 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs542614099 | chr3:34633988-34633989 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs147363778 | chr3:34634062-34634063 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs371320290 | chr3:34634213-34634214 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs140189738 | chr3:34634236-34634237 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs565073415 | chr3:34634241-34634242 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs570630416 | chr3:34634259-34634260 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs544453104 | chr3:34634325-34634326 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs562798387 | chr3:34634373-34634374 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs539231120 | chr3:34634434-34634435 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs530434315 | chr3:34634439-34634440 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs111811907 | chr3:34634440-34634441 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs142024500 | chr3:34634441-34634442 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs187450275 | chr3:34634445-34634446 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs573507288 | chr3:34634499-34634500 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs552237755 | chr3:34634519-34634520 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs570605432 | chr3:34634532-34634533 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs7629903 | chr3:34634544-34634545 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
43 | rs556401855 | chr3:34634555-34634556 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs192298991 | chr3:34634571-34634572 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs535762796 | chr3:34634588-34634589 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs553810257 | chr3:34634592-34634593 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs150662511 | chr3:34634606-34634607 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs540310661 | chr3:34634608-34634609 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs558622821 | chr3:34634625-34634626 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs150926410 | chr3:34634627-34634628 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Glioblastoma multiforme | 21080181 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Colorectal cancer | 21297112 | CNVD |
Lynch syndrome | 18415027 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Urothelial carcinoma | 18382360 | CNVD |
Melanoma | 18172304 | CNVD |
Cervical cancer | 21062161 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Insulin resistance | 16721378 | CNVD |
Neuroblastoma | 18664255 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Neuroblastoma | 21484798 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Oral cancer | 19627613 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Epithelial cancer | 22065749 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Liposarcoma | 21253554 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Pancreatic endocrine tumor | 20981439 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Oral cancer | 21386901 | CNVD |
Cutaneous squamous cell carcinomas | 19131950 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Retinoblastoma | 21504564 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Renal cell carcinoma | 21668985 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Lung cancer | 20668451 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Intellectual disability | 22102821 | CNVD |
Breast cancer | 17603634 | CNVD |
Esophageal cancer | 20955586 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Breast cancer | 17133270 | CNVD |
Uveal melanoma | 20484589 | CNVD |
Autism | 22495311 | CNVD |
Melanoma | 20688739 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Cancer | 21183584 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Esophageal squamous carcinoma | 17470683 | CNVD |
Wilms tumour | 17204608 | CNVD |
Biliary cancer | 19435499 | CNVD |
Non-small cell lung cancer | 20864512 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Kartagener syndrome | 16639409 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 20164919 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:34633400-34635600 | Weak transcription | Thymus | Thymus |