Variant report

Variant	esv3441347
Chromosome Location	chr19:22225302-22229623
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF208-2	chr19:22228681-22228787	ENSG00000269199.1
2	lnc-ZNF208-2	chr19:22228893-22229114	ENSG00000269199.1
3	lnc-ZNF208-2	chr19:22226302-22226327	ENSG00000269199.1

Extended variants
information (count: 123 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:123 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs544710151	chr19:22226414-22226415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs562793877	chr19:22226418-22226419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs530325750	chr19:22226425-22226426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs548458516	chr19:22226440-22226441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs541219875	chr19:22226445-22226446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs553639274	chr19:22226547-22226548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs79833848	chr19:22226550-22226551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs76817931	chr19:22226555-22226556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs546222751	chr19:22226566-22226567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs147289699	chr19:22226574-22226575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs62112917	chr19:22226580-22226581	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs545076920	chr19:22226633-22226634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs114951439	chr19:22226661-22226662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs140903977	chr19:22226668-22226669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs141483909	chr19:22226713-22226714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs187357646	chr19:22226739-22226740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs190809307	chr19:22226742-22226743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs182275865	chr19:22226754-22226755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs534067347	chr19:22226859-22226860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs150850724	chr19:22226907-22226908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs34797845	chr19:22226924-22226925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs71180511	chr19:22226925-22226926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200333610	chr19:22226926-22226927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs547711552	chr19:22226949-22226950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs186531512	chr19:22226959-22226960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs544575124	chr19:22226972-22226973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs567504078	chr19:22227054-22227055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs79984252	chr19:22227058-22227059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs62112918	chr19:22227079-22227080	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs62112919	chr19:22227145-22227146	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs112830356	chr19:22227146-22227147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs62112920	chr19:22227149-22227150	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs368879640	chr19:22227162-22227163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs560504559	chr19:22227163-22227164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs538586081	chr19:22227180-22227181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs528017677	chr19:22227204-22227205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs568246022	chr19:22227205-22227206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs139275587	chr19:22227227-22227228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs190136770	chr19:22227228-22227229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs531991201	chr19:22227234-22227235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs550273751	chr19:22227252-22227253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568955991	chr19:22227334-22227335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs78226360	chr19:22227343-22227344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs548402036	chr19:22227369-22227370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs566664624	chr19:22227376-22227377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs409439	chr19:22227432-22227433	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs534895861	chr19:22227433-22227434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs558898233	chr19:22227493-22227494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs550880457	chr19:22227495-22227496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs577172060	chr19:22227528-22227529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:22226400-22228800	Weak transcription	Aorta	Aorta

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