Variant report
| Variant | esv3441778 |
|---|---|
| Chromosome Location | chr4:22580054-22582152 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs6448169 | chr4:22580058-22580059 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 2 | rs6448170 | chr4:22580062-22580063 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs527586567 | chr4:22580069-22580070 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs551714989 | chr4:22580171-22580172 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs372827688 | chr4:22580173-22580174 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs192716798 | chr4:22580185-22580186 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs531256855 | chr4:22580258-22580259 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs182806268 | chr4:22580280-22580281 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs568095590 | chr4:22580336-22580337 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs536819326 | chr4:22580369-22580370 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs554886067 | chr4:22580371-22580372 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs115906045 | chr4:22580376-22580377 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs114455805 | chr4:22580379-22580380 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:57)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17603634 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Cancer | 21637783 | CNVD |
| Melanoma | 21693616 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Chordoma | 21602918 | CNVD |
| HIV/AIDS | 22032296 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Autism | 22495311 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Chronic lymphocytic leukemia | 20421269 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Breast cancer | 21858162 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Cancer | 21183584 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Gastric cancer | 21586687 | CNVD |
| Breast cancer | 17133270 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Melanoma | 22183965 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Burkitt''s lymphoma | 20823134 | CNVD |
| Burkitt''s lymphoma | 19759907 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Cancer | 22183965 | CNVD |
| Gastric cancer | 16891809 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:22579600-22580400 | Enhancers | Colon Smooth Muscle | Colon |
| 2 | chr4:22579600-22580400 | Enhancers | Rectal Smooth Muscle | rectum |
| 3 | chr4:22580000-22580400 | Enhancers | Liver | Liver |
