Variant report

Variant	esv3442578
Chromosome Location	chr5:119355102-119378953
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM170A-2	chr5:119375212-119375297	l_3004_chr5:119198853-119375297_testes

Extended variants
information (count: 443 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:443 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs572581508	chr5:119355106-119355107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs542883893	chr5:119355107-119355108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149109568	chr5:119355112-119355113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143204859	chr5:119355119-119355120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs561479644	chr5:119355151-119355152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs146659673	chr5:119355188-119355189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs116608330	chr5:119355212-119355213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs554848431	chr5:119355229-119355230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs555775611	chr5:119355232-119355233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs140220903	chr5:119355241-119355242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs190804512	chr5:119355265-119355266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs145262600	chr5:119355266-119355267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs538633134	chr5:119355295-119355296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs558140784	chr5:119355298-119355299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs377082165	chr5:119355320-119355321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs137910665	chr5:119355330-119355331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs572115928	chr5:119355375-119355376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs576576000	chr5:119355376-119355377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs553924627	chr5:119355381-119355382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs534949347	chr5:119355386-119355387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs369779654	chr5:119355427-119355428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs573943265	chr5:119355499-119355500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs542700623	chr5:119355506-119355507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs140800314	chr5:119355513-119355514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs531557698	chr5:119355529-119355530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs255807	chr5:119355536-119355537	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs557319718	chr5:119355550-119355551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs78481144	chr5:119355556-119355557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs547762559	chr5:119355562-119355563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs112679552	chr5:119355565-119355566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs529924686	chr5:119355566-119355567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs6874179	chr5:119355587-119355588	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs569755260	chr5:119355619-119355620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs75621121	chr5:119355650-119355651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs183428081	chr5:119355714-119355715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs565567009	chr5:119355721-119355722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs532441021	chr5:119355726-119355727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs112302880	chr5:119355738-119355739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs558048492	chr5:119355798-119355799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs536448452	chr5:119355827-119355828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs188392422	chr5:119355833-119355834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs547666278	chr5:119355863-119355864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs545202556	chr5:119355884-119355885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs115011994	chr5:119355890-119355891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs578107176	chr5:119355894-119355895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs541286639	chr5:119355926-119355927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs149634654	chr5:119355961-119355962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs529888064	chr5:119355983-119355984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs147318326	chr5:119355994-119355995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs139365017	chr5:119356031-119356032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
Colorectal cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Ovarian cancer	21720365	CNVD
Salivary gland tumor	18059337	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	19377443	CNVD
Prostate cancer	16461572	CNVD
Myelofibrosis	22110671	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Glaucoma	21310917	CNVD
Glioblastoma multiforme	22286061	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Renal cell carcinoma	18194544	CNVD

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119353200-119357200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:119358800-119359200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:119365800-119366800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:119366200-119366600	Enhancers	Fetal Stomach	stomach
5	chr5:119372400-119374000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:119372600-119373000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr5:119372600-119373800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:119373000-119373600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr5:119373600-119374000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:119373800-119375200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr5:119374000-119375200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr5:119374000-119375400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr5:119375200-119376000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr5:119375200-119376000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr5:119375400-119376000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr5:119376000-119378600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr5:119376000-119379200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr5:119377400-119377800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:119378600-119379600	Enhancers	Monocytes-CD14+_RO01746	blood

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