Variant report

Variant	esv3443408
Chromosome Location	chr10:42597466-42598455
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 312 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:312 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74197433	chr10:42597467-42597468	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs547123715	chr10:42597468-42597469	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs56142438	chr10:42597471-42597472	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs75622409	chr10:42597475-42597476	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs560334705	chr10:42597476-42597477	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs529332126	chr10:42597479-42597480	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs74186976	chr10:42597480-42597481	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs71262001	chr10:42597485-42597486	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs4468941	chr10:42597486-42597487	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs398037976	chr10:42597489-42597490	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs55810755	chr10:42597490-42597491	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs61847968	chr10:42597496-42597497	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs74194913	chr10:42597502-42597503	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs67642660	chr10:42597506-42597507	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs74205426	chr10:42597508-42597509	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs75578580	chr10:42597509-42597510	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs34547042	chr10:42597512-42597513	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs77308225	chr10:42597513-42597514	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs568909091	chr10:42597515-42597516	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs75138737	chr10:42597516-42597517	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs76326365	chr10:42597517-42597518	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs74218545	chr10:42597521-42597522	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs71236226	chr10:42597523-42597524	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs113129070	chr10:42597529-42597530	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs71248816	chr10:42597530-42597531	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs79190907	chr10:42597531-42597532	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs76628802	chr10:42597542-42597543	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs75594154	chr10:42597544-42597545	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs538280493	chr10:42597548-42597549	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs76383947	chr10:42597549-42597550	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139858180	chr10:42597553-42597554	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs143828478	chr10:42597554-42597555	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs551496521	chr10:42597560-42597561	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs146854370	chr10:42597565-42597566	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs4587684	chr10:42597566-42597567	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs533863479	chr10:42597573-42597574	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs36124489	chr10:42597575-42597576	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs67452385	chr10:42597582-42597583	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs67013070	chr10:42597588-42597589	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs573919741	chr10:42597591-42597592	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs536333804	chr10:42597592-42597593	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs556343076	chr10:42597595-42597596	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs71242001	chr10:42597597-42597598	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs4949044	chr10:42597601-42597602	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs34965016	chr10:42597604-42597605	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs112254846	chr10:42597610-42597611	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs143083894	chr10:42597621-42597622	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs147054254	chr10:42597622-42597623	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs544950710	chr10:42597624-42597625	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs376212967	chr10:42597627-42597628	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42596600-42597800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:42596600-42598000	ZNF genes & repeats	Fetal Intestine Large	intestine
3	chr10:42596600-42598600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:42596600-42598600	ZNF genes & repeats	Psoas Muscle	Psoas
5	chr10:42596600-42600200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:42596600-42600200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:42596600-42600200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr10:42596600-42600200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr10:42596600-42600200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:42596600-42600200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:42596600-42600200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
12	chr10:42596600-42600200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
13	chr10:42596600-42600200	ZNF genes & repeats	Aorta	Aorta
14	chr10:42596600-42600200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
15	chr10:42596600-42600200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
16	chr10:42596600-42600200	ZNF genes & repeats	Colonic Mucosa	Colon
17	chr10:42596600-42600200	ZNF genes & repeats	Colon Smooth Muscle	Colon
18	chr10:42596600-42600200	ZNF genes & repeats	Placenta	Placenta
19	chr10:42596600-42600200	ZNF genes & repeats	Fetal Stomach	stomach
20	chr10:42596600-42600200	ZNF genes & repeats	Small Intestine	intestine
21	chr10:42596600-42600200	ZNF genes & repeats	Stomach Mucosa	stomach
22	chr10:42596600-42600200	ZNF genes & repeats	Spleen	Spleen
23	chr10:42596600-42600200	ZNF genes & repeats	HSMMtube	muscle
24	chr10:42596600-42600200	ZNF genes & repeats	Osteobl	bone
25	chr10:42596600-42600400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:42596600-42600400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
29	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:42596600-42600400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
31	chr10:42596600-42600400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
32	chr10:42596600-42600400	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr10:42596600-42600400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
34	chr10:42596600-42600400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
35	chr10:42596600-42600400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
36	chr10:42596600-42600400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
37	chr10:42596600-42600400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
38	chr10:42596600-42600400	ZNF genes & repeats	GM12878-XiMat	blood
39	chr10:42596600-42600400	ZNF genes & repeats	Hela-S3	cervix
40	chr10:42596600-42600400	ZNF genes & repeats	NH-A	brain
41	chr10:42596600-42600600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr10:42596600-42600600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
43	chr10:42596600-42600600	ZNF genes & repeats	Primary B cells from cord blood	blood
44	chr10:42596600-42600600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
45	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
47	chr10:42596600-42600600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:42596600-42600600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:42596600-42600600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
50	chr10:42596600-42600800	ZNF genes & repeats	HUVEC	blood vessel

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