Variant report

Variant	esv3443566
Chromosome Location	chr15:83346946-83367664
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:324)
CpG islands
(count:793)
Chromatin interactive
region (count:50)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:324 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:83349316-83349357	K562	blood:	n/a	n/a
2	ATF1	chr15:83349094-83349456	K562	blood:	n/a	n/a
3	ATF2	chr15:83349107-83349516	H1-hESC	embryonic stem cell:	n/a	n/a
4	ATF3	chr15:83349114-83349429	K562	blood:	n/a	n/a
5	BACH1	chr15:83348943-83349694	H1-hESC	embryonic stem cell:	n/a	n/a
6	BHLHE40	chr15:83348990-83349851	K562	blood:	n/a	n/a
7	CBX3	chr15:83348872-83349770	K562	blood:	n/a	n/a
8	CCNT2	chr15:83348881-83349535	K562	blood:	n/a	n/a
9	CEBPB	chr15:83349213-83349516	H1-hESC	embryonic stem cell:	n/a	n/a
10	CEBPB	chr15:83350386-83350586	H1-hESC	embryonic stem cell:	n/a	chr15:83350536-83350549
11	CEBPB	chr15:83350322-83350774	MCF-7	breast:	n/a	chr15:83350536-83350549
12	CEBPB	chr15:83349208-83349489	K562	blood:	n/a	n/a
13	CHD1	chr15:83349422-83349715	H1-hESC	embryonic stem cell:	n/a	n/a
14	CHD2	chr15:83349232-83349545	H1-hESC	embryonic stem cell:	n/a	n/a
15	CHD2	chr15:83349300-83349323	K562	blood:	n/a	n/a
16	CHD2	chr15:83348951-83349094	K562	blood:	n/a	n/a
17	CREB1	chr15:83349071-83349360	A549	lung:	n/a	n/a
18	CREB1	chr15:83348884-83349661	H1-hESC	embryonic stem cell:	n/a	n/a
19	CREB1	chr15:83348844-83349572	K562	blood:	n/a	n/a
20	CREB1	chr15:83348783-83349578	H1-hESC	embryonic stem cell:	n/a	n/a
21	CTCF	chr15:83349240-83349335	Kidney_OC	kidney:	n/a	n/a
22	CTCF	chr15:83349240-83349390	HRPEpiC	eye:	n/a	n/a
23	CTCF	chr15:83349240-83349390	HEEpiC	esophagus:	n/a	n/a
24	CTCF	chr15:83349480-83349630	GM12865	blood:	n/a	n/a
25	CTCF	chr15:83349260-83349410	GM12865	blood:	n/a	n/a
26	CTCF	chr15:83349217-83349401	GM12878	blood:	n/a	n/a
27	CTCF	chr15:83349231-83349400	Pancreas_OC	pancreas:	n/a	n/a
28	CTCF	chr15:83349336-83349348	Kidney_OC	kidney:	n/a	n/a
29	CTCF	chr15:83348920-83349070	K562	blood:	n/a	n/a
30	CTCF	chr15:83349240-83349390	SAEC	small airway:	n/a	n/a
31	CTCF	chr15:83348992-83348997	MCF-7	breast:	n/a	n/a
32	CTCF	chr15:83349260-83349410	HEK293	kidney:	n/a	n/a
33	CTCF	chr15:83349500-83349650	GM12872	blood:	n/a	n/a
34	CTCF	chr15:83349160-83349310	A549	lung:	n/a	n/a
35	CTCF	chr15:83348949-83349110	MCF-7	breast:	n/a	n/a
36	CTCF	chr15:83348821-83349054	K562	blood:	n/a	n/a
37	CTCF	chr15:83349207-83349422	GM19238	blood:	n/a	n/a
38	CTCF	chr15:83348937-83349061	K562	blood:	n/a	n/a
39	CTCF	chr15:83348900-83349050	HMEC	breast:	n/a	n/a
40	CTCF	chr15:83349195-83349426	MCF-7	breast:	n/a	n/a
41	CTCF	chr15:83349183-83349444	K562	blood:	n/a	n/a
42	CTCF	chr15:83349237-83349373	GM20000	blood:	n/a	n/a
43	CTCF	chr15:83349204-83349428	NHEK	skin:	n/a	n/a
44	CTCF	chr15:83349525-83349617	MCF-7	breast:	n/a	n/a
45	CTCF	chr15:83349220-83349370	GM12874	blood:	n/a	n/a
46	CTCF	chr15:83349220-83349370	GM12873	blood:	n/a	n/a
47	CTCF	chr15:83349220-83349370	GM12872	blood:	n/a	n/a
48	CTCF	chr15:83349220-83349370	GM12865	blood:	n/a	n/a
49	CTCF	chr15:83349250-83349385	GM13977	blood:	n/a	n/a
50	CTCF	chr15:83349612-83349652	NHEK	skin:	n/a	n/a

(count:793 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:83349420-83349470	HepG2	liver:	n/a
2	chr15:83349264-83349314	ECC-1	luminal epithelium:	n/a
3	chr15:83348985-83349035	T-47D	breast:	n/a
4	chr15:83349264-83349314	IMR90	lung:	fetal
5	chr15:83348985-83349035	A549	lung:	n/a
6	chr15:83348741-83348791	ECC-1	luminal epithelium:	n/a
7	chr15:83361057-83361107	PFSK-1	brain:	n/a
8	chr15:83351564-83351614	HEEpiC	esophagus:	n/a
9	chr15:83349171-83349221	PANC-1	pancreas:	n/a
10	chr15:83360963-83361013	Caco-2	colon:	n/a
11	chr15:83352030-83352080	SKMC	muscle:	n/a
12	chr15:83349613-83349663	HPAEpiC	pulmonary alveolar:	n/a
13	chr15:83360963-83361013	CMK	blood:	n/a
14	chr15:83349722-83349772	HAEpiC	amniotic membrane:	n/a
15	chr15:83349264-83349314	T-47D	breast:	n/a
16	chr15:83349613-83349663	MCF10A-Er-Src	breast:	n/a
17	chr15:83349613-83349663	HRE	kidney:	n/a
18	chr15:83349722-83349772	RPTEC	kidney:	n/a
19	chr15:83349864-83349914	HCF	heart:	n/a
20	chr15:83349420-83349470	IMR90	lung:	fetal
21	chr15:83349613-83349663	AoSMC	blood vessel:	n/a
22	chr15:83349264-83349314	SK-N-SH	brain:	n/a
23	chr15:83349864-83349914	HRE	kidney:	n/a
24	chr15:83348985-83349035	MCF-7	breast:	n/a
25	chr15:83348741-83348791	NHBE	bronchial:	n/a
26	chr15:83351564-83351614	AG04449	skin:	fetal
27	chr15:83348985-83349035	HRE	kidney:	n/a
28	chr15:83360963-83361013	SK-N-SH	brain:	n/a
29	chr15:83348985-83349035	SK-N-SH_RA	brain:	n/a
30	chr15:83349722-83349772	GM12878	blood:	n/a
31	chr15:83349864-83349914	AG09319	gingival:	n/a
32	chr15:83349722-83349772	NB4	blood:	n/a
33	chr15:83348985-83349035	U87	brain:	n/a
34	chr15:83361171-83361221	HCPEpiC	choroid plexus:	n/a
35	chr15:83349420-83349470	GM12892	blood:	n/a
36	chr15:83348985-83349035	SKMC	muscle:	n/a
37	chr15:83349613-83349663	HIPEpiC	eye:	n/a
38	chr15:83349613-83349663	AG09319	gingival:	n/a
39	chr15:83349864-83349914	HCPEpiC	choroid plexus:	n/a
40	chr15:83349171-83349221	NB4	blood:	n/a
41	chr15:83349264-83349314	K562	blood:	n/a
42	chr15:83360963-83361013	NH-A	brain:	n/a
43	chr15:83360963-83361013	HL-60	blood:	n/a
44	chr15:83349722-83349772	ovcar-3	ovarian:	n/a
45	chr15:83361171-83361221	MCF-7	breast:	n/a
46	chr15:83351564-83351614	CMK	blood:	n/a
47	chr15:83360963-83361013	NHDF-neo	bronchial:	n/a
48	chr15:83349864-83349914	SK-N-MC	brain:	n/a
49	chr15:83349264-83349314	NB4	blood:	n/a
50	chr15:83349420-83349470	HRCEpiC	kidney:	n/a

(count:50 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83348154..83351401-chr15:83364138..83368453,6	MCF-7	breast:
2	chr15:83346566..83348884-chr15:83517556..83519595,2	K562	blood:
3	chr15:83347977..83352145-chr15:83417264..83422141,9	MCF-7	breast:
4	chr15:83337134..83338829-chr15:83346733..83348887,2	MCF-7	breast:
5	chr15:83345005..83347848-chr15:83417546..83419531,2	MCF-7	breast:
6	chr15:83348361..83350237-chr15:83363732..83365416,2	K562	blood:
7	chr15:83294774..83297381-chr15:83349087..83350883,2	MCF-7	breast:
8	chr15:83347146..83349993-chr15:83416756..83419846,3	K562	blood:
9	chr15:83360228..83362314-chr15:83364159..83366946,2	MCF-7	breast:
10	chr15:83348209..83350926-chr15:83376211..83377868,2	MCF-7	breast:
11	chr15:83347772..83350508-chr15:83353548..83357340,4	K562	blood:
12	chr15:83343188..83346700-chr15:83346875..83348889,3	K562	blood:
13	chr15:83356395..83357957-chr15:83365398..83367817,2	K562	blood:
14	chr15:83316633..83319257-chr15:83348234..83350901,2	MCF-7	breast:
15	chr15:83315484..83318072-chr15:83348095..83350570,4	MCF-7	breast:
16	chr15:83313759..83319278-chr15:83347483..83351536,8	K562	blood:
17	chr15:83356917..83359124-chr15:83401843..83404031,2	K562	blood:
18	chr15:83366884..83369469-chr15:83380434..83383177,2	MCF-7	breast:
19	chr15:83347908..83350889-chr3:44378735..44380988,2	MCF-7	breast:
20	chr15:83225181..83227262-chr15:83347590..83349115,2	MCF-7	breast:
21	chr15:83348154..83351401-chr15:83364138..83368453,6	MCF-7	breast:
22	chr15:83326624..83328865-chr15:83351824..83354482,2	K562	blood:
23	chr15:83353470..83356026-chr15:83368438..83370517,2	MCF-7	breast:
24	chr15:83347091..83349558-chr15:83378371..83383465,4	MCF-7	breast:
25	chr15:83344898..83347752-chr15:83354446..83355974,2	K562	blood:
26	chr15:83348227..83351663-chr15:83352788..83356756,5	K562	blood:
27	chr15:83348193..83350766-chr15:83477443..83480779,4	MCF-7	breast:
28	chr15:83348031..83349686-chr15:83366769..83368430,2	MCF-7	breast:
29	chr15:83330156..83333342-chr15:83346386..83350515,4	MCF-7	breast:
30	chr15:83346623..83348757-chr15:83479507..83481301,2	K562	blood:
31	chr15:83359290..83361558-chr15:83381669..83384100,2	MCF-7	breast:
32	chr15:83328672..83331748-chr15:83346249..83349279,3	MCF-7	breast:
33	chr15:83347963..83350756-chr15:83406519..83408532,2	K562	blood:
34	chr15:83349235..83351553-chr15:83406587..83408989,2	MCF-7	breast:
35	chr15:83349249..83350821-chr15:83733828..83735921,2	K562	blood:
36	chr15:83315715..83320562-chr15:83347753..83351536,6	K562	blood:
37	chr15:83366323..83369466-chr15:83375659..83378922,4	K562	blood:
38	chr15:83363148..83365417-chr15:83367537..83371581,3	K562	blood:
39	chr15:83348980..83351208-chr15:83352150..83355145,4	MCF-7	breast:
40	chr15:83348031..83349686-chr15:83366769..83368430,2	MCF-7	breast:
41	chr15:83366312..83369718-chr15:83416708..83419690,4	MCF-7	breast:
42	chr15:83330561..83333118-chr15:83349292..83351934,2	K562	blood:
43	chr15:83348934..83350853-chr15:83378356..83380655,2	K562	blood:
44	chr15:83349003..83350734-chr15:83355172..83356699,2	MCF-7	breast:
45	chr15:83354617..83357529-chr15:83379940..83381747,2	K562	blood:
46	chr15:83344898..83347752-chr15:83354446..83355974,2	K562	blood:
47	chr15:83241058..83243039-chr15:83367492..83370195,2	K562	blood:
48	chr15:83356395..83357957-chr15:83365398..83367817,2	K562	blood:
49	chr15:83348285..83351278-chr15:83678934..83682211,3	MCF-7	breast:
50	chr15:83346733..83351654-chr15:83416978..83420559,7	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-379H8.1.1-1	chr15:83360763-83361572	ENSG00000259462.1
2	lnc-RP11-379H8.1.1-1	chr15:83360763-83361571	ENSG00000244937

No data

Variant related genes	Relation type
ENSG00000259707	TF binding region
AP3B2	TF binding region
ENSG00000259707	CpG island
AP3B2	CpG island
ENSG00000260608	chromatin interactions
ENSG00000259707	chromatin interactions
ENSG00000103723	chromatin interactions
ENSG00000259315	chromatin interactions
ENSG00000179152	chromatin interactions
ENSG00000250988	chromatin interactions
ENSG00000259462	chromatin interactions
ENSG00000064726	chromatin interactions
ENSG00000228141	chromatin interactions
ENSG00000214575	chromatin interactions
ENSG00000156232	chromatin interactions
ENSG00000271937	chromatin interactions
ENSG00000103942	chromatin interactions
ENSG00000169609	chromatin interactions
ENSG00000252690	chromatin interactions
SEC62	miRNA target sites

Extended variants
information (count: 727 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:727 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371136516	chr15:83346958-83346959	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs374991110	chr15:83346963-83346964	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs191073441	chr15:83346971-83346972	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs149275898	chr15:83346994-83346995	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs17158372	chr15:83346998-83346999	Strong transcription Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs377099085	chr15:83347042-83347043	Strong transcription Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs558845057	chr15:83347074-83347075	Strong transcription Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs183376596	chr15:83347144-83347145	Strong transcription Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs534981276	chr15:83347150-83347151	Strong transcription Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs148424120	chr15:83347177-83347178	Strong transcription Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs4569239	chr15:83347193-83347194	Strong transcription Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs574075896	chr15:83347194-83347195	Strong transcription Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs571487655	chr15:83347204-83347205	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs186026821	chr15:83347207-83347208	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs190795882	chr15:83347218-83347219	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
16	rs576485427	chr15:83347221-83347222	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs545894068	chr15:83347307-83347308	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs559248808	chr15:83347353-83347354	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs573015998	chr15:83347354-83347355	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
20	rs541736236	chr15:83347364-83347365	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
21	rs562002916	chr15:83347496-83347497	Weak transcription Strong transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
22	rs376086595	chr15:83347497-83347498	Weak transcription Strong transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
23	rs143458572	chr15:83347522-83347523	Weak transcription Strong transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
24	rs550150847	chr15:83347551-83347552	Weak transcription Strong transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
25	rs368388921	chr15:83347553-83347554	Weak transcription Strong transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
26	rs372707432	chr15:83347698-83347699	Weak transcription Strong transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
27	rs563680525	chr15:83347720-83347721	Weak transcription Strong transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
28	rs532464346	chr15:83347729-83347730	Weak transcription Strong transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
29	rs370444674	chr15:83347775-83347776	Weak transcription Strong transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
30	rs566116978	chr15:83347842-83347843	Weak transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
31	rs147138587	chr15:83347858-83347859	Weak transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
32	rs183356103	chr15:83347869-83347870	Weak transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
33	rs371231459	chr15:83347884-83347885	Weak transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
34	rs140612892	chr15:83347905-83347906	Weak transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
35	rs144472180	chr15:83347907-83347908	Weak transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
36	rs374369854	chr15:83348057-83348058	Weak transcription	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
37	rs556499467	chr15:83348064-83348065	Weak transcription	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
38	rs557101073	chr15:83348076-83348077	Weak transcription	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
39	rs397853636	chr15:83348107-83348108	Weak transcription	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
40	rs187684283	chr15:83348154-83348155	Weak transcription	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
41	rs536542612	chr15:83348195-83348196	Weak transcription	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
42	rs369062332	chr15:83348221-83348222	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
43	rs193259732	chr15:83348247-83348248	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
44	rs75046366	chr15:83348280-83348281	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
45	rs572942499	chr15:83348291-83348292	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
46	rs542053978	chr15:83348305-83348306	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
47	rs151317499	chr15:83348421-83348422	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers	Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
48	rs367937379	chr15:83348423-83348424	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers	Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
49	rs12438174	chr15:83348494-83348495	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers	Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
50	rs28581493	chr15:83348495-83348496	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers	Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
abnormal development	18461090	CNVD
Intellectual disability	22102821	CNVD
renal disease	17924346	CNVD
Breast cancer	20409316	CNVD
Mental retardation	17847001	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Pancreatic cancer	17952125	CNVD
Melanoma	20877625	CNVD

Chromatin state (count:364 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83335200-83349200	Weak transcription	Brain Hippocampus Middle	brain
2	chr15:83336800-83348200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:83340200-83348600	Weak transcription	Pancreas	Pancrea
4	chr15:83340600-83348600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:83342800-83348400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:83343000-83350000	Weak transcription	Brain Substantia Nigra	brain
7	chr15:83344200-83347200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:83344200-83347800	Strong transcription	Brain Inferior Temporal Lobe	brain
9	chr15:83344200-83348800	Weak transcription	Gastric	stomach
10	chr15:83344400-83347600	Strong transcription	Brain Cingulate Gyrus	brain
11	chr15:83344400-83347800	Strong transcription	Brain Anterior Caudate	brain
12	chr15:83345600-83348400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:83345600-83348800	Weak transcription	Brain Germinal Matrix	brain
14	chr15:83346200-83347000	Enhancers	K562	blood
15	chr15:83346400-83347000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:83346400-83348400	Weak transcription	Fetal Brain Female	brain
17	chr15:83346400-83357400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:83346600-83357200	Weak transcription	Brain Angular Gyrus	brain
19	chr15:83347000-83348600	Weak transcription	K562	blood
20	chr15:83347200-83348600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:83347600-83349600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr15:83347800-83349400	Weak transcription	Brain Anterior Caudate	brain
23	chr15:83347800-83357000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:83348200-83348400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr15:83348200-83348600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:83348400-83348600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
27	chr15:83348400-83348600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr15:83348400-83348600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr15:83348400-83348600	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr15:83348400-83348800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
31	chr15:83348400-83349200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
32	chr15:83348400-83349800	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr15:83348400-83350400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
34	chr15:83348600-83348800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:83348600-83348800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
36	chr15:83348600-83348800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
37	chr15:83348600-83348800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr15:83348600-83348800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
39	chr15:83348600-83348800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr15:83348600-83348800	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr15:83348600-83348800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr15:83348600-83348800	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:83348600-83348800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:83348600-83348800	Enhancers	Esophagus	oesophagus
45	chr15:83348600-83348800	Enhancers	Lung	lung
46	chr15:83348600-83348800	Enhancers	Pancreas	Pancrea
47	chr15:83348600-83348800	Enhancers	Right Atrium	heart
48	chr15:83348600-83348800	Enhancers	Spleen	Spleen
49	chr15:83348600-83348800	Enhancers	HMEC	breast
50	chr15:83348600-83349000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links