Variant report

Variant	esv3443846
Chromosome Location	chr10:116982812-116984710
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:70 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs141664351	chr10:116982842-116982843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs565917467	chr10:116982903-116982904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs200215890	chr10:116982929-116982930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs530357102	chr10:116982944-116982945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs548447682	chr10:116982964-116982965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs115524271	chr10:116982985-116982986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs537011640	chr10:116982991-116982992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs116232153	chr10:116982992-116982993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs368106139	chr10:116982997-116982998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs535112660	chr10:116983015-116983016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs191071780	chr10:116983042-116983043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs574656702	chr10:116983098-116983099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs527853530	chr10:116983123-116983124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs11197123	chr10:116983131-116983132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs183207370	chr10:116983143-116983144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs114753198	chr10:116983152-116983153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs575198312	chr10:116983154-116983155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs549283570	chr10:116983157-116983158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs74601349	chr10:116983158-116983159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs186091427	chr10:116983207-116983208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs561286260	chr10:116983223-116983224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs113885683	chr10:116983232-116983233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs114201967	chr10:116983300-116983301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs72836580	chr10:116983340-116983341	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs530200824	chr10:116983407-116983408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs112464973	chr10:116983453-116983454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549907417	chr10:116983467-116983468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs71484976	chr10:116983475-116983476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs114953858	chr10:116983529-116983530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs570209897	chr10:116983532-116983533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs71484977	chr10:116983537-116983538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs190954499	chr10:116983558-116983559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs377736216	chr10:116983644-116983645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs374279357	chr10:116983670-116983671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs202063330	chr10:116983671-116983672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs4593921	chr10:116983673-116983674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs10885674	chr10:116983675-116983676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs372946623	chr10:116983691-116983692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs71476115	chr10:116983693-116983694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs71500829	chr10:116983697-116983698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs66542526	chr10:116983699-116983700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs141093144	chr10:116983721-116983722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs183097676	chr10:116983722-116983723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs12781228	chr10:116983728-116983729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs11197124	chr10:116983756-116983757	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs12781253	chr10:116983757-116983758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs188135826	chr10:116983761-116983762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs12781082	chr10:116983792-116983793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs12781089	chr10:116983798-116983799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs535151748	chr10:116983839-116983840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Neuroticism	17667963	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17133270	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116979600-117000200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:116981000-117010800	Weak transcription	Aorta	Aorta

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