Variant report

Variant	esv3445234
Chromosome Location	chr11:65189471-65189830
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:65188737-65190864	HepG2	liver:	n/a	n/a
2	ARID3A	chr11:65189615-65189838	K562	blood:	n/a	n/a
3	ATF1	chr11:65189408-65190597	K562	blood:	n/a	n/a
4	ATF2	chr11:65189333-65190408	H1-hESC	embryonic stem cell:	n/a	n/a
5	ATF2	chr11:65189018-65189908	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr11:65189266-65198425	GM12878	blood:	n/a	n/a
7	ATF2	chr11:65189117-65190706	GM12878	blood:	n/a	n/a
8	ATF3	chr11:65189353-65189906	K562	blood:	n/a	chr11:65189724-65189744 chr11:65189722-65189733 chr11:65189721-65189736 chr11:65189722-65189732 chr11:65189713-65189733 chr11:65189721-65189734 chr11:65189722-65189735 chr11:65189725-65189733 chr11:65189725-65189736 chr11:65189719-65189733 chr11:65189698-65189707 chr11:65189725-65189732 chr11:65189725-65189735 chr11:65189723-65189736 chr11:65189722-65189735 chr11:65189724-65189735 chr11:65189723-65189734 chr11:65189725-65189735 chr11:65189722-65189732 chr11:65189723-65189734
9	ATF3	chr11:65189626-65189840	GM12878	blood:	n/a	chr11:65189724-65189744 chr11:65189722-65189733 chr11:65189721-65189736 chr11:65189722-65189732 chr11:65189713-65189733 chr11:65189721-65189734 chr11:65189722-65189735 chr11:65189725-65189733 chr11:65189725-65189736 chr11:65189719-65189733 chr11:65189698-65189707 chr11:65189725-65189732 chr11:65189725-65189735 chr11:65189723-65189736 chr11:65189722-65189735 chr11:65189724-65189735 chr11:65189723-65189734 chr11:65189725-65189735 chr11:65189722-65189732 chr11:65189723-65189734
10	ATF3	chr11:65189472-65196366	A549	lung:	n/a	chr11:65189724-65189744 chr11:65189722-65189733 chr11:65189721-65189736 chr11:65189722-65189732 chr11:65189713-65189733 chr11:65189721-65189734 chr11:65189722-65189735 chr11:65189725-65189733 chr11:65189725-65189736 chr11:65189719-65189733 chr11:65189698-65189707 chr11:65189725-65189732 chr11:65189725-65189735 chr11:65189723-65189736 chr11:65189722-65189735 chr11:65189724-65189735 chr11:65189723-65189734 chr11:65189725-65189735 chr11:65189722-65189732 chr11:65189723-65189734
11	ATF3	chr11:65189467-65191321	A549	lung:	n/a	chr11:65189724-65189744 chr11:65189722-65189733 chr11:65189721-65189736 chr11:65189722-65189732 chr11:65189713-65189733 chr11:65189721-65189734 chr11:65189722-65189735 chr11:65189725-65189733 chr11:65189725-65189736 chr11:65189719-65189733 chr11:65189698-65189707 chr11:65189725-65189732 chr11:65189725-65189735 chr11:65189723-65189736 chr11:65189722-65189735 chr11:65189724-65189735 chr11:65189723-65189734 chr11:65189725-65189735 chr11:65189722-65189732 chr11:65189723-65189734
12	ATF3	chr11:65189444-65189849	K562	blood:	n/a	chr11:65189724-65189744 chr11:65189722-65189733 chr11:65189721-65189736 chr11:65189722-65189732 chr11:65189713-65189733 chr11:65189721-65189734 chr11:65189722-65189735 chr11:65189725-65189733 chr11:65189725-65189736 chr11:65189719-65189733 chr11:65189698-65189707 chr11:65189725-65189732 chr11:65189725-65189735 chr11:65189723-65189736 chr11:65189722-65189735 chr11:65189724-65189735 chr11:65189723-65189734 chr11:65189725-65189735 chr11:65189722-65189732 chr11:65189723-65189734
13	ATF3	chr11:65189587-65189875	HepG2	liver:	n/a	chr11:65189724-65189744 chr11:65189722-65189733 chr11:65189721-65189736 chr11:65189722-65189732 chr11:65189713-65189733 chr11:65189721-65189734 chr11:65189722-65189735 chr11:65189725-65189733 chr11:65189725-65189736 chr11:65189719-65189733 chr11:65189698-65189707 chr11:65189725-65189732 chr11:65189725-65189735 chr11:65189723-65189736 chr11:65189722-65189735 chr11:65189724-65189735 chr11:65189723-65189734 chr11:65189725-65189735 chr11:65189722-65189732 chr11:65189723-65189734
14	BACH1	chr11:65189454-65190385	H1-hESC	embryonic stem cell:	n/a	n/a
15	BACH1	chr11:65189352-65189734	K562	blood:	n/a	n/a
16	BCL11A	chr11:65189529-65189914	GM12878	blood:	n/a	chr11:65189809-65189818 chr11:65189812-65189821
17	BCL3	chr11:65189432-65189979	GM12878	blood:	n/a	chr11:65189809-65189818 chr11:65189812-65189821
18	BCL3	chr11:65188501-65193372	A549	lung:	n/a	chr11:65189809-65189818 chr11:65189812-65189821
19	BCL3	chr11:65188583-65199301	A549	lung:	n/a	chr11:65189809-65189818 chr11:65189812-65189821
20	BCLAF1	chr11:65189395-65189917	K562	blood:	n/a	chr11:65189809-65189818 chr11:65189812-65189821
21	BCLAF1	chr11:65188603-65189919	GM12878	blood:	n/a	chr11:65189809-65189818 chr11:65189812-65189821
22	BCLAF1	chr11:65189321-65189895	GM12878	blood:	n/a	chr11:65189809-65189818 chr11:65189812-65189821
23	BHLHE40	chr11:65188473-65195180	GM12878	blood:	n/a	chr11:65189710-65189726
24	BHLHE40	chr11:65189636-65189885	HepG2	liver:	n/a	chr11:65189710-65189726
25	BHLHE40	chr11:65189458-65191121	K562	blood:	n/a	chr11:65189710-65189726
26	BHLHE40	chr11:65188680-65191552	HepG2	liver:	n/a	chr11:65189710-65189726
27	BHLHE40	chr11:65189532-65190684	A549	lung:	n/a	chr11:65189710-65189726
28	BRCA1	chr11:65189542-65189892	GM12878	blood:	n/a	n/a
29	BRCA1	chr11:65189578-65190373	H1-hESC	embryonic stem cell:	n/a	n/a
30	BRCA1	chr11:65189188-65189825	HepG2	liver:	n/a	n/a
31	BRCA1	chr11:65188603-65195559	Hela-S3	cervix:	n/a	n/a
32	CBX3	chr11:65189287-65189929	K562	blood:	n/a	n/a
33	CCNT2	chr11:65189416-65193100	K562	blood:	n/a	chr11:65190156-65190165 chr11:65189940-65189949 chr11:65189698-65189707
34	CEBPB	chr11:65189617-65189847	H1-hESC	embryonic stem cell:	n/a	n/a
35	CEBPB	chr11:65189383-65190714	A549	lung:	n/a	chr11:65190203-65190214
36	CEBPB	chr11:65188392-65190702	Hela-S3	cervix:	n/a	chr11:65190203-65190214
37	CEBPB	chr11:65189568-65190492	HepG2	liver:	n/a	chr11:65190203-65190214
38	CEBPB	chr11:65189582-65190580	HepG2	liver:	n/a	chr11:65190203-65190214
39	CEBPB	chr11:65189593-65190497	A549	lung:	n/a	chr11:65190203-65190214
40	CEBPB	chr11:65189548-65190748	MCF-7	breast:	n/a	chr11:65190203-65190214
41	CEBPB	chr11:65189367-65190624	K562	blood:	n/a	chr11:65190203-65190214
42	CEBPB	chr11:65189426-65189916	ECC-1	luminal epithelium:	n/a	n/a
43	CEBPB	chr11:65189229-65190833	A549	lung:	n/a	chr11:65190203-65190214
44	CEBPB	chr11:65189319-65191056	K562	blood:	n/a	chr11:65190203-65190214
45	CEBPB	chr11:65189368-65190636	IMR90	lung:	n/a	chr11:65190203-65190214
46	CEBPB	chr11:65188469-65192134	HCT-116	colon:	n/a	chr11:65190203-65190214
47	CEBPD	chr11:65189678-65189888	HepG2	liver:	n/a	n/a
48	CEBPD	chr11:65189396-65190651	HepG2	liver:	n/a	chr11:65189401-65189412
49	CEBPD	chr11:65189260-65198409	K562	blood:	n/a	chr11:65193846-65193857 chr11:65189401-65189412
50	CEBPD	chr11:65189335-65189896	K562	blood:	n/a	chr11:65189401-65189412

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:65189500-65189550	Hepatocyte	liver:	n/a
2	chr11:65189500-65189550	SK-N-SH_RA	brain:	n/a
3	chr11:65189500-65189550	HepG2	liver:	n/a
4	chr11:65189500-65189550	H1-hESC	embryonic stem cell:	embryo
5	chr11:65189500-65189550	ECC-1	luminal epithelium:	n/a
6	chr11:65189500-65189550	MCF-7	breast:	n/a
7	chr11:65189500-65189550	SAEC	small airway:	n/a
8	chr11:65189500-65189550	HMEC	breast:	n/a
9	chr11:65189500-65189550	HUVEC	blood vessel:	n/a
10	chr11:65189500-65189550	NHDF-neo	bronchial:	n/a
11	chr11:65189500-65189550	AG09319	gingival:	n/a
12	chr11:65189500-65189550	PFSK-1	brain:	n/a
13	chr11:65189500-65189550	AG04450	lung:	fetal
14	chr11:65189500-65189550	HRPEpiC	eye:	n/a
15	chr11:65189500-65189550	HNPCEpiC	eye:	n/a
16	chr11:65189500-65189550	NHBE	bronchial:	n/a
17	chr11:65189500-65189550	SKMC	muscle:	n/a
18	chr11:65189500-65189550	Caco-2	colon:	n/a
19	chr11:65189500-65189550	SK-N-MC	brain:	n/a
20	chr11:65189500-65189550	HPAEpiC	pulmonary alveolar:	n/a
21	chr11:65189500-65189550	GM12878	blood:	n/a
22	chr11:65189500-65189550	GM12891	blood:	n/a
23	chr11:65189500-65189550	MCF10A-Er-Src	breast:	n/a
24	chr11:65189500-65189550	HEEpiC	esophagus:	n/a
25	chr11:65189500-65189550	HCM	heart:	n/a
26	chr11:65189500-65189550	HIPEpiC	eye:	n/a
27	chr11:65189500-65189550	K562	blood:	n/a
28	chr11:65189500-65189550	RPTEC	kidney:	n/a
29	chr11:65189500-65189550	HL-60	blood:	n/a
30	chr11:65189500-65189550	PANC-1	pancreas:	n/a
31	chr11:65189500-65189550	HCF	heart:	n/a
32	chr11:65189500-65189550	GM06990	blood:	n/a
33	chr11:65189500-65189550	GM12892	blood:	n/a
34	chr11:65189500-65189550	U87	brain:	n/a
35	chr11:65189500-65189550	NH-A	brain:	n/a
36	chr11:65189500-65189550	NT2-D1	testis:	n/a
37	chr11:65189500-65189550	BJ	skin:	n/a
38	chr11:65189500-65189550	HEK293	kidney:	embryo
39	chr11:65189500-65189550	NB4	blood:	n/a
40	chr11:65189500-65189550	ovcar-3	ovarian:	n/a
41	chr11:65189500-65189550	GM19239	blood:	n/a
42	chr11:65189500-65189550	PrEC	prostate:	n/a
43	chr11:65189500-65189550	BE2_C	brain:	n/a
44	chr11:65189500-65189550	AG09309	skin:	n/a
45	chr11:65189500-65189550	IMR90	lung:	fetal
46	chr11:65189500-65189550	HRE	kidney:	n/a
47	chr11:65189500-65189550	AG04449	skin:	fetal
48	chr11:65189500-65189550	HCPEpiC	choroid plexus:	n/a
49	chr11:65189500-65189550	CMK	blood:	n/a
50	chr11:65189500-65189550	AoSMC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:65186294..65191468-chr11:65379126..65384544,8	MCF-7	breast:
2	chr11:65185945..65193560-chr11:65336627..65344485,19	K562	blood:
3	chr11:65188738..65191479-chr11:65666779..65669038,2	K562	blood:
4	chr11:65189755..65190543-chr17:56736360..56737154,2	HCT-116	colon:
5	chr11:65189319..65190221-chr20:36155563..36156401,2	Hela-S3	cervix:
6	chr11:65188681..65191508-chr20:39763982..39766152,2	MCF-7	breast:
7	chr11:65189703..65190226-chr11:65266113..65266694,2	Hela-S3	cervix:
8	chr11:64018454..64020454-chr11:65189395..65191669,2	MCF-7	breast:
9	chr11:65187654..65189531-chr5:172755721..172758429,2	MCF-7	breast:
10	chr11:65188517..65189510-chr5:74632769..74633547,2	Hela-S3	cervix:
11	chr11:65184371..65196984-chr11:65316952..65328208,29	K562	blood:
12	chr11:65027099..65029284-chr11:65187685..65190495,2	MCF-7	breast:
13	chr11:65187359..65190548-chr17:56735338..56738257,3	MCF-7	breast:
14	chr11:65187686..65190825-chr11:65382299..65384886,3	K562	blood:
15	chr11:65188903..65194388-chr11:65323256..65328284,10	MCF-7	breast:
16	chr11:65186095..65189808-chr11:65319853..65322686,3	MCF-7	breast:
17	chr11:65189137..65192069-chr11:65349973..65352376,3	K562	blood:
18	chr11:65189682..65191694-chr9:129621754..129624687,2	K562	blood:
19	chr11:64973188..64975760-chr11:65189553..65191524,2	K562	blood:
20	chr11:65188897..65190954-chr4:1242152..1244163,2	MCF-7	breast:
21	chr11:65188846..65191466-chr11:65325823..65328502,2	MCF-7	breast:
22	chr11:65189710..65191298-chr11:65624964..65626721,2	MCF-7	breast:
23	chr10:97050094..97051679-chr11:65189591..65191802,2	MCF-7	breast:
24	chr11:65188590..65191136-chr20:52210090..52212711,2	MCF-7	breast:
25	chr11:65189252..65190127-chr11:65265584..65266337,2	MCF-7	breast:
26	chr11:65187484..65190433-chr7:75931597..75933590,2	MCF-7	breast:
27	chr11:65188178..65189840-chr11:65370838..65373215,2	MCF-7	breast:
28	chr11:65189010..65195293-chr11:65321323..65327708,15	K562	blood:
29	chr11:65185186..65203592-chr11:65286522..65299399,55	K562	blood:
30	chr10:27530518..27532485-chr11:65188635..65191492,2	MCF-7	breast:
31	chr11:65082107..65083673-chr11:65189217..65191365,2	MCF-7	breast:
32	chr11:65189338..65192942-chr11:65624454..65628332,4	K562	blood:
33	chr11:65189398..65190260-chr7:100026798..100027378,3	Hela-S3	cervix:
34	chr11:65188884..65189872-chr3:194040535..194041511,2	Hela-S3	cervix:
35	chr11:65028103..65030991-chr11:65188788..65191974,4	K562	blood:
36	chr11:65189079..65189869-chr4:169930890..169931804,2	Hela-S3	cervix:
37	chr1:16838669..16840937-chr11:65189259..65191240,2	MCF-7	breast:
38	chr11:64545114..64546892-chr11:65188018..65190269,2	K562	blood:
39	chr11:65188743..65190282-chr11:65428876..65431588,2	MCF-7	breast:
40	chr11:65183635..65190622-chr11:65305653..65310980,8	MCF-7	breast:
41	chr11:65189521..65192173-chr17:56736309..56738189,2	MCF-7	breast:
42	chr11:65188857..65190458-chr11:65768140..65769977,2	K562	blood:
43	chr11:65188258..65192947-chr11:65311570..65315780,5	MCF-7	breast:
44	chr11:65188862..65190415-chr3:63844051..63846487,2	MCF-7	breast:
45	chr11:65189817..65190683-chr4:120133737..120134690,2	Hela-S3	cervix:
46	chr11:65188740..65190659-chr17:59487538..59489067,2	MCF-7	breast:
47	chr11:65189570..65191757-chr11:66239067..66241497,2	MCF-7	breast:
48	chr11:65188418..65191702-chr11:65777424..65780862,3	MCF-7	breast:
49	chr11:65187744..65191441-chr11:65307194..65309813,3	MCF-7	breast:
50	chr11:62607615..62610579-chr11:65189094..65191693,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LTBP3-2	chr11:65189793-65190665	NONHSAT022110
2	lnc-AP000769.1-2	chr11:65189075-65189595	l_496_chr11:65187036-65195821_adrenal

Variant related genes	Relation type
NEAT1	TF binding region
NEAT1	CpG island
ENSG00000173039	chromatin interactions
ENSG00000173727	chromatin interactions
ENSG00000251562	chromatin interactions
ENSG00000270526	chromatin interactions
ENSG00000175376	chromatin interactions
ENSG00000173327	chromatin interactions
ENSG00000113739	chromatin interactions
ENSG00000168066	chromatin interactions
ENSG00000184436	chromatin interactions
ENSG00000233396	chromatin interactions
ENSG00000162298	chromatin interactions
ENSG00000262412	chromatin interactions
ENSG00000159692	chromatin interactions
ENSG00000124181	chromatin interactions
ENSG00000251445	chromatin interactions
ENSG00000201558	chromatin interactions
ENSG00000149798	chromatin interactions
ENSG00000186787	chromatin interactions
ENSG00000106211	chromatin interactions
ENSG00000146834	chromatin interactions
ENSG00000175334	chromatin interactions
ENSG00000178636	chromatin interactions
ENSG00000149782	chromatin interactions
ENSG00000142186	chromatin interactions
ENSG00000107438	chromatin interactions
ENSG00000152518	chromatin interactions
ENSG00000226310	chromatin interactions
ENSG00000166619	chromatin interactions
ENSG00000172757	chromatin interactions
ENSG00000014138	chromatin interactions
ENSG00000240549	chromatin interactions
ENSG00000175315	chromatin interactions
ENSG00000172732	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000176973	chromatin interactions
ENSG00000173442	chromatin interactions
ENSG00000145439	chromatin interactions
ENSG00000014216	chromatin interactions
ENSG00000197136	chromatin interactions
ENSG00000113161	chromatin interactions
ENSG00000124693	chromatin interactions
ENSG00000196810	chromatin interactions
ENSG00000230513	chromatin interactions
ENSG00000270117	chromatin interactions
ENSG00000107897	chromatin interactions
ENSG00000175592	chromatin interactions
ENSG00000206652	chromatin interactions
ENSG00000260233	chromatin interactions
ENSG00000168056	chromatin interactions
ENSG00000054118	chromatin interactions
ENSG00000177125	chromatin interactions
ENSG00000145390	chromatin interactions
ENSG00000171940	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000267280	chromatin interactions
ENSG00000173465	chromatin interactions
ENSG00000269038	chromatin interactions
ENSG00000119669	chromatin interactions
ENSG00000174516	chromatin interactions
POLR2D	miRNA target sites

Extended variants
information (count: 11 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552628757	chr11:65189505-65189506	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	Overlapped CNVs	n/a
2	rs61059875	chr11:65189512-65189513	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs186855392	chr11:65189556-65189557	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	51 gene(s)	Overlapped CNVs	n/a
4	rs35677634	chr11:65189690-65189691	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	52 gene(s)	Overlapped CNVs	n/a
5	rs555154608	chr11:65189692-65189693	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	52 gene(s)	Overlapped CNVs	n/a
6	rs11606823	chr11:65189703-65189704	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	52 gene(s)	Overlapped CNVs	n/a
7	rs574988547	chr11:65189734-65189735	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	53 gene(s)	Overlapped CNVs	n/a
8	rs544120362	chr11:65189745-65189746	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	54 gene(s)	Overlapped CNVs	n/a
9	rs115118194	chr11:65189772-65189773	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	54 gene(s)	Overlapped CNVs	n/a
10	rs3015963	chr11:65189792-65189793	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	54 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs373740732	chr11:65189803-65189804	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	54 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Pituitary adenoma	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	16417655	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Prostate cancer	18779856	CNVD
Cancer	17160897	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Hodgkin''s lymphoma	18641027	CNVD

Chromatin state (count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65182200-65189600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr11:65183400-65189600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr11:65183400-65189600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:65183400-65190200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:65183600-65189600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr11:65183600-65189600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
7	chr11:65183600-65189600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
8	chr11:65183600-65189600	Flanking Active TSS	Dnd41	blood
9	chr11:65183600-65189800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr11:65183600-65194200	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr11:65183800-65189600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr11:65183800-65189600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr11:65186000-65189600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:65186000-65189600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:65186000-65193800	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr11:65186000-65195000	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
17	chr11:65186200-65192400	Active TSS	Right Ventricle	heart
18	chr11:65186200-65197400	Active TSS	Psoas Muscle	Psoas
19	chr11:65186800-65191800	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr11:65187200-65190000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:65187800-65189600	Flanking Active TSS	Fetal Muscle Leg	muscle
22	chr11:65188000-65194200	Active TSS	Liver	Liver
23	chr11:65188400-65189600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:65188400-65189600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr11:65188400-65189600	Flanking Active TSS	Fetal Intestine Large	intestine
26	chr11:65188400-65189600	Flanking Active TSS	Placenta	Placenta
27	chr11:65188400-65189600	Flanking Active TSS	Fetal Stomach	stomach
28	chr11:65188400-65189600	Flanking Active TSS	Fetal Thymus	thymus
29	chr11:65188400-65189600	Flanking Active TSS	NH-A	brain
30	chr11:65188400-65191400	Active TSS	Left Ventricle	heart
31	chr11:65188400-65191800	Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr11:65188400-65193600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr11:65188400-65194400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:65188400-65194600	Active TSS	Esophagus	oesophagus
35	chr11:65188600-65189600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:65188600-65189600	Flanking Active TSS	Fetal Intestine Small	intestine
37	chr11:65188600-65189600	Active TSS	Right Atrium	heart
38	chr11:65188600-65190000	Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr11:65188600-65190400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:65188600-65190400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:65188600-65190400	Active TSS	Fetal Brain Female	brain
42	chr11:65188600-65190400	Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr11:65188600-65190800	Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr11:65188600-65190800	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr11:65188600-65190800	Active TSS	Colon Smooth Muscle	Colon
46	chr11:65188600-65190800	Active TSS	Stomach Mucosa	stomach
47	chr11:65188600-65190800	Active TSS	A549	lung
48	chr11:65188600-65190800	Active TSS	Monocytes-CD14+_RO01746	blood
49	chr11:65188600-65191000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:65188600-65191400	Active TSS	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links