Variant report
| Variant | esv3445422 |
|---|---|
| Chromosome Location | chr3:140429974-140430173 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs6439940 | chr3:140429987-140429988 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 2 | rs561274967 | chr3:140429988-140429989 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs147408101 | chr3:140430009-140430010 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs6439941 | chr3:140430033-140430034 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 5 | rs570086261 | chr3:140430044-140430045 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs565346186 | chr3:140430049-140430050 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs559880956 | chr3:140430054-140430055 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs551152572 | chr3:140430070-140430071 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs569490583 | chr3:140430072-140430073 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs542856792 | chr3:140430079-140430080 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs201943192 | chr3:140430080-140430081 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:51)
| Disease | PMID | Source |
|---|---|---|
| Basal cell lymphoma | 17053054 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Uveal melanoma | 21693616 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Retinoblastoma | 21504564 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Autism | 22495311 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Congenital diaphragmatic hernia | 21085971 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Squamous cell cancer | 20885788 | CNVD |
| Melanoma | 18172304 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Bipolar disorder | 18458673 | CNVD |
| Breast cancer | 22032731 | CNVD |
| Breast cancer | 16461572 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Cervical Cancer | 21857958 | CNVD |
| Melanoma | 21693616 | CNVD |
| Lung cancer | 21426551 | CNVD |
| Cancer | 21637783 | CNVD |
| Cervical cancer | 21063398 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Cancer | 22065749 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| microdeletion syndrome | 22180640 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Basal cell lymphoma | 21115979 | CNVD |
| Ovarian cancer | 22174824 | CNVD |
| Colorectal cancer | 18645599 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Lung cancer | 16740712 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Myelodysplastic syndrome | 21251322 | CNVD |
| Blepharophimosis-ptosis-epicanthus inversus syndrome | 22067867 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| abnormal development | 18461090 | CNVD |
| Schizophrenia | 17989066 | CNVD |
| Cancer | 21129771 | CNVD |
| Ovarian cancer | 23621864 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:140428000-140436600 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 2 | chr3:140428600-140432200 | Enhancers | HepG2 | liver |
| 3 | chr3:140428600-140435600 | Weak transcription | Pancreas | Pancrea |
| 4 | chr3:140429200-140430800 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 5 | chr3:140429200-140433200 | Weak transcription | Ovary | ovary |
| 6 | chr3:140429800-140431000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 7 | chr3:140429800-140432800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 8 | chr3:140430000-140430800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
