Variant report

Variant	esv3445628
Chromosome Location	chr3:90160612-90162560
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:80 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562874091	chr3:90160619-90160620	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs182638967	chr3:90160633-90160634	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs372791750	chr3:90160659-90160660	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs145837537	chr3:90160722-90160723	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs115459151	chr3:90160730-90160731	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs79476852	chr3:90160731-90160732	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs147807508	chr3:90160794-90160795	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs115196630	chr3:90160802-90160803	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs539753112	chr3:90160830-90160831	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs558080878	chr3:90160844-90160845	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs142512968	chr3:90160851-90160852	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs186958281	chr3:90160881-90160882	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs150256898	chr3:90160907-90160908	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs549677953	chr3:90160915-90160916	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs574471831	chr3:90160947-90160948	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs540397583	chr3:90160960-90160961	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs554021915	chr3:90160977-90160978	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs77500841	chr3:90160986-90160987	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs191446106	chr3:90161021-90161022	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs76844831	chr3:90161042-90161043	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182567943	chr3:90161089-90161090	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs539089262	chr3:90161103-90161104	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs541885177	chr3:90161116-90161117	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs562182353	chr3:90161160-90161161	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs532467584	chr3:90161185-90161186	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547677564	chr3:90161196-90161197	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs559670076	chr3:90161199-90161200	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs530067851	chr3:90161220-90161221	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs189068277	chr3:90161264-90161265	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs375730339	chr3:90161289-90161290	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547541649	chr3:90161309-90161310	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs570713576	chr3:90161310-90161311	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs145528363	chr3:90161317-90161318	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs370543466	chr3:90161318-90161319	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs145789808	chr3:90161374-90161375	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs533393720	chr3:90161390-90161391	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs550051493	chr3:90161392-90161393	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200740162	chr3:90161420-90161421	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200297372	chr3:90161421-90161422	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs377668054	chr3:90161422-90161423	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs185369810	chr3:90161472-90161473	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs138938134	chr3:90161491-90161492	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs568108568	chr3:90161502-90161503	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs62277677	chr3:90161554-90161555	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs553958846	chr3:90161556-90161557	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs201301100	chr3:90161557-90161558	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs561619123	chr3:90161581-90161582	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs539680998	chr3:90161595-90161596	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs190100099	chr3:90161607-90161608	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs570090785	chr3:90161609-90161610	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Soft tissue tumor	16732325	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90157400-90161200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:90159200-90160800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr3:90160200-90160800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:90160800-90162400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:90160800-90164200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:90161200-90161600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:90161600-90162000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:90162000-90164400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:90162400-90164200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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