Variant report

Variant	esv3445879
Chromosome Location	chr4:171974477-171978175
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:17)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GALNTL6-2	chr4:171976506-171976568	XLOC_003777
2	lnc-GALNTL6-2	chr4:171977356-171977489	NR_038838
3	lnc-GALNTL6-2	chr4:171976979-171977049	NR_038838
4	lnc-GALNTL6-2	chr4:171976506-171976568	XLOC_003777
5	lnc-GALNTL6-2	chr4:171976551-171976568	XLOC_003777
6	lnc-GALNTL6-2	chr4:171977356-171977489	ENSG00000248872
7	lnc-GALNTL6-2	chr4:171976979-171977049	XLOC_003777
8	lnc-GALNTL6-2	chr4:171977356-171977489	XLOC_003777
9	lnc-GALNTL6-2	chr4:171976506-171976568	ENSG00000248872
10	lnc-GALNTL6-2	chr4:171976979-171977049	ENSG00000248872
11	lnc-GALNTL6-2	chr4:171976979-171977049	XLOC_003777
12	lnc-GALNTL6-2	chr4:171976506-171976568	NR_038838
13	lnc-GALNTL6-2	chr4:171977351-171977489	XLOC_003777
14	lnc-GALNTL6-2	chr4:171976506-171976543	XLOC_003777
15	lnc-GALNTL6-2	chr4:171976979-171980314	XLOC_003777
16	lnc-GALNTL6-2	chr4:171976979-171977049	XLOC_003777
17	lnc-GALNTL6-2	chr4:171977326-171977347	XLOC_003777

No data

Variant related genes	Relation type
MECP2	miRNA target sites
CYP1B1	miRNA target sites
TOPBP1	miRNA target sites
MED12L	miRNA target sites
NUDT19	miRNA target sites

Extended variants
information (count: 44 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369669847	chr4:171976541-171976542	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs182189816	chr4:171976556-171976557	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs113604545	chr4:171976998-171976999	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs545777263	chr4:171977051-171977052	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs559395385	chr4:171977081-171977082	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs150758434	chr4:171977082-171977083	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs565855301	chr4:171977086-171977087	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs79873933	chr4:171977115-171977116	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs528615420	chr4:171977136-171977137	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs369872350	chr4:171977168-171977169	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs551831867	chr4:171977171-171977172	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs561717887	chr4:171977179-171977180	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs189903613	chr4:171977186-171977187	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs550524656	chr4:171977262-171977263	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs564365264	chr4:171977297-171977298	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs570602655	chr4:171977307-171977308	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs181760945	chr4:171977345-171977346	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs28706078	chr4:171977372-171977373	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs115758873	chr4:171977387-171977388	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs185677174	chr4:171977388-171977389	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs549091555	chr4:171977389-171977390	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs78402401	chr4:171977410-171977411	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs190288393	chr4:171977443-171977444	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs569937554	chr4:171977468-171977469	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs180689578	chr4:171977478-171977479	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs535458390	chr4:171977519-171977520	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs534548177	chr4:171977523-171977524	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs555435027	chr4:171977543-171977544	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs552997346	chr4:171977612-171977613	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs546559544	chr4:171977615-171977616	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs572911738	chr4:171977617-171977618	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs570949548	chr4:171977686-171977687	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs541925773	chr4:171977699-171977700	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs561793981	chr4:171977710-171977711	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs140098868	chr4:171977716-171977717	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs67084214	chr4:171977723-171977724	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs557823367	chr4:171977728-171977729	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs578114622	chr4:171977791-171977792	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs544347262	chr4:171977824-171977825	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs186033758	chr4:171977842-171977843	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs192141705	chr4:171977968-171977969	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs207465262	chr4:171978072-171978073	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs540168021	chr4:171978082-171978083	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs543560806	chr4:171978091-171978092	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Hepatocellular carcinoma	16750200	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Neuroblastoma	16790693	CNVD
Developmental delay	22127048	CNVD
Schizophrenia	23813976	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16774939	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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