Variant report

Variant	esv3446056
Chromosome Location	chr19:23361400-23481878
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1510)
CpG islands
(count:916)
Chromatin interactive
region (count:17)
LncRNA
region (count:89)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1510 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:23464504-23464974	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:23456812-23457259	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:23456159-23456538	HepG2	liver:	n/a	n/a
4	ARID3A	chr19:23446454-23446478	HepG2	liver:	n/a	n/a
5	ARID3A	chr19:23445696-23446125	HepG2	liver:	n/a	n/a
6	ARID3A	chr19:23444247-23444991	HepG2	liver:	n/a	n/a
7	ARID3A	chr19:23466709-23467067	HepG2	liver:	n/a	n/a
8	ARID3A	chr19:23447039-23447307	HepG2	liver:	n/a	n/a
9	ATF1	chr19:23446042-23446111	K562	blood:	n/a	n/a
10	ATF1	chr19:23447008-23447350	K562	blood:	n/a	n/a
11	ATF1	chr19:23433220-23433454	K562	blood:	n/a	n/a
12	ATF3	chr19:23366086-23366362	K562	blood:	n/a	n/a
13	BATF	chr19:23445759-23445944	GM12878	blood:	n/a	chr19:23445853-23445864
14	BATF	chr19:23445639-23446052	GM12878	blood:	n/a	chr19:23445853-23445864
15	BCL3	chr19:23444939-23445223	GM12878	blood:	n/a	n/a
16	BCLAF1	chr19:23432706-23433316	GM12878	blood:	n/a	chr19:23432778-23432791
17	BHLHE40	chr19:23432887-23433585	GM12878	blood:	n/a	n/a
18	BHLHE40	chr19:23456098-23456569	GM12878	blood:	n/a	n/a
19	BHLHE40	chr19:23456932-23457093	K562	blood:	n/a	n/a
20	BHLHE40	chr19:23456780-23457323	GM12878	blood:	n/a	n/a
21	BHLHE40	chr19:23465524-23465669	GM12878	blood:	n/a	n/a
22	BRCA1	chr19:23477057-23477096	GM12878	blood:	n/a	n/a
23	BRCA1	chr19:23456865-23457107	HepG2	liver:	n/a	n/a
24	BRCA1	chr19:23395180-23395185	GM12878	blood:	n/a	n/a
25	BRCA1	chr19:23444310-23444991	HepG2	liver:	n/a	n/a
26	BRCA1	chr19:23456838-23457224	GM12878	blood:	n/a	n/a
27	CBX3	chr19:23405791-23406025	K562	blood:	n/a	n/a
28	CEBPB	chr19:23446897-23447304	Hela-S3	cervix:	n/a	n/a
29	CEBPB	chr19:23438212-23439768	HepG2	liver:	n/a	n/a
30	CEBPB	chr19:23443767-23444036	A549	lung:	n/a	n/a
31	CEBPB	chr19:23456709-23457365	H1-hESC	embryonic stem cell:	n/a	n/a
32	CEBPB	chr19:23443663-23445174	HepG2	liver:	n/a	n/a
33	CEBPB	chr19:23389386-23389703	IMR90	lung:	n/a	chr19:23389536-23389547
34	CEBPB	chr19:23406745-23406947	HepG2	liver:	n/a	chr19:23406918-23406931
35	CEBPB	chr19:23438224-23439406	HepG2	liver:	n/a	n/a
36	CEBPB	chr19:23441772-23441994	HepG2	liver:	n/a	n/a
37	CEBPB	chr19:23442798-23443065	A549	lung:	n/a	n/a
38	CEBPB	chr19:23438592-23439755	A549	lung:	n/a	n/a
39	CEBPB	chr19:23445642-23445984	HepG2	liver:	n/a	n/a
40	CEBPB	chr19:23444425-23444584	HepG2	liver:	n/a	n/a
41	CEBPB	chr19:23395011-23395106	HepG2	liver:	n/a	chr19:23395054-23395065
42	CEBPB	chr19:23442815-23443132	IMR90	lung:	n/a	n/a
43	CEBPB	chr19:23438969-23439732	IMR90	lung:	n/a	n/a
44	CEBPB	chr19:23421826-23422021	A549	lung:	n/a	n/a
45	CEBPB	chr19:23444405-23444967	A549	lung:	n/a	n/a
46	CEBPB	chr19:23389453-23389649	A549	lung:	n/a	chr19:23389536-23389547
47	CEBPB	chr19:23464853-23465097	HepG2	liver:	n/a	n/a
48	CEBPB	chr19:23442786-23443138	HepG2	liver:	n/a	n/a
49	CEBPB	chr19:23446477-23447348	IMR90	lung:	n/a	n/a
50	CEBPB	chr19:23446406-23447404	HepG2	liver:	n/a	n/a

(count:916 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:23456790-23456840	IMR90	lung:	fetal
2	chr19:23456790-23456840	IMR90	lung:	fetal
3	chr19:23387068-23387118	HepG2	liver:	n/a
4	chr19:23456680-23456730	HL-60	blood:	n/a
5	chr19:23456680-23456730	NB4	blood:	n/a
6	chr19:23383482-23383532	AG10803	skin:	n/a
7	chr19:23456588-23456638	Jurkat	blood:	n/a
8	chr19:23433225-23433275	PFSK-1	brain:	n/a
9	chr19:23454693-23454743	ECC-1	luminal epithelium:	n/a
10	chr19:23456575-23456625	MCF-7	breast:	n/a
11	chr19:23387133-23387183	HRPEpiC	eye:	n/a
12	chr19:23383482-23383532	SK-N-SH_RA	brain:	n/a
13	chr19:23387133-23387183	NHBE	bronchial:	n/a
14	chr19:23456680-23456730	AG04449	skin:	fetal
15	chr19:23383482-23383532	HCM	heart:	n/a
16	chr19:23385934-23385984	GM12892	blood:	n/a
17	chr19:23383482-23383532	Hepatocyte	liver:	n/a
18	chr19:23386650-23386700	T-47D	breast:	n/a
19	chr19:23383482-23383532	NHDF-neo	bronchial:	n/a
20	chr19:23383482-23383532	T-47D	breast:	n/a
21	chr19:23456575-23456625	HAEpiC	amniotic membrane:	n/a
22	chr19:23383482-23383532	HCT-116	colon:	n/a
23	chr19:23385934-23385984	HCM	heart:	n/a
24	chr19:23456790-23456840	RPTEC	kidney:	n/a
25	chr19:23433225-23433275	PANC-1	pancreas:	n/a
26	chr19:23456588-23456638	SK-N-MC	brain:	n/a
27	chr19:23386784-23386834	HUVEC	blood vessel:	n/a
28	chr19:23386892-23386942	GM12892	blood:	n/a
29	chr19:23386784-23386834	ProgFib	skin:	n/a
30	chr19:23456790-23456840	SK-N-SH	brain:	n/a
31	chr19:23390590-23390640	GM06990	blood:	n/a
32	chr19:23456680-23456730	SK-N-SH_RA	brain:	n/a
33	chr19:23386650-23386700	AG09309	skin:	n/a
34	chr19:23386650-23386700	HUVEC	blood vessel:	n/a
35	chr19:23385934-23385984	GM12878	blood:	n/a
36	chr19:23386650-23386700	MCF-7	breast:	n/a
37	chr19:23456790-23456840	HUVEC	blood vessel:	n/a
38	chr19:23385934-23385984	ProgFib	skin:	n/a
39	chr19:23387068-23387118	AoSMC	blood vessel:	n/a
40	chr19:23385934-23385984	GM06990	blood:	n/a
41	chr19:23390590-23390640	HPAEpiC	pulmonary alveolar:	n/a
42	chr19:23456680-23456730	PrEC	prostate:	n/a
43	chr19:23390590-23390640	PANC-1	pancreas:	n/a
44	chr19:23390590-23390640	Caco-2	colon:	n/a
45	chr19:23390590-23390640	T-47D	breast:	n/a
46	chr19:23456588-23456638	AG04450	lung:	fetal
47	chr19:23457005-23457055	SKMC	muscle:	n/a
48	chr19:23386650-23386700	HL-60	blood:	n/a
49	chr19:23387068-23387118	SK-N-MC	brain:	n/a
50	chr19:23433225-23433275	ProgFib	skin:	n/a

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:23433051..23435448-chr19:23455541..23457705,2	MCF-7	breast:
2	chr17:56735011..56736549-chr19:23464937..23466566,2	MCF-7	breast:
3	chr19:23432656..23435103-chr19:23454271..23457071,2	MCF-7	breast:
4	chr19:23433051..23435448-chr19:23455541..23457705,2	MCF-7	breast:
5	chr19:23443599..23446084-chr19:23455345..23457112,3	MCF-7	breast:
6	chr13:91999526..92000349-chr19:23432834..23433455,2	NB4	blood:
7	chr19:23443599..23446084-chr19:23455345..23457112,3	MCF-7	breast:
8	chr19:23431827..23434798-chr19:23443635..23445528,2	MCF-7	breast:
9	chr19:23432656..23435103-chr19:23454271..23457071,2	MCF-7	breast:
10	chr19:23426796..23428873-chr19:23431504..23434558,3	K562	blood:
11	chr19:23439080..23441693-chr19:23448189..23450377,2	MCF-7	breast:
12	chr19:23450360..23452680-chr19:23454564..23456528,2	MCF-7	breast:
13	chr19:23426796..23428873-chr19:23431504..23433351,2	K562	blood:
14	chr19:23431827..23434798-chr19:23443635..23445528,2	MCF-7	breast:
15	chr19:23456110..23458063-chr19:23465875..23467770,2	MCF-7	breast:
16	chr19:23456603..23457127-chr19:24215859..24216611,4	MCF-7	breast:
17	chr19:23450360..23452680-chr19:23454564..23456528,2	MCF-7	breast:

(count:89 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC092329.1-1	chr19:23443666-23443736	ENSG00000213971.3
2	lnc-AC092329.1-1	chr19:23453020-23453094	ENSG00000213971.3
3	lnc-AC092329.1-1	chr19:23444422-23444546	NONHSAT063866
4	lnc-AC092329.1-1	chr19:23444422-23444546	ENSG00000213971.3
5	lnc-AC092329.1-1	chr19:23452622-23453094	XLOC_013274
6	lnc-AC092329.1-1	chr19:23452565-23453094	ENSG00000213971.3
7	lnc-AC092329.1-1	chr19:23444422-23444546	NONHSAT063868
8	lnc-AC092329.1-1	chr19:23443632-23443736	XLOC_013274
9	lnc-AC092329.1-1	chr19:23453020-23453094	ENSG00000213971.3
10	lnc-AC092329.1-1	chr19:23453020-23453094	NONHSAT063868
11	lnc-AC092329.1-1	chr19:23443461-23443736	ENSG00000213971.3
12	lnc-AC092329.1-1	chr19:23444422-23444546	XLOC_013274
13	lnc-AC092329.1-1	chr19:23456878-23457050	ENSG00000213971.3
14	lnc-AC092329.1-1	chr19:23451965-23452692	ENSG00000213971.3
15	lnc-AC092329.1-1	chr19:23437950-23438236	NONHSAT146968
16	lnc-AC092329.1-1	chr19:23444422-23444546	XLOC_013274
17	lnc-AC092329.1-1	chr19:23442824-23442918	ENSG00000213971.3
18	lnc-AC092329.1-1	chr19:23444422-23444546	ENSG00000213971.3
19	lnc-AC092329.1-1	chr19:23443666-23443736	ENSG00000213971.3
20	lnc-AC092329.1-1	chr19:23455421-23455525	ENSG00000213971.3
21	lnc-AC092329.1-1	chr19:23440403-23442918	XLOC_013274
22	lnc-AC092329.1-1	chr19:23456878-23457021	XLOC_013274
23	lnc-AC092329.1-1	chr19:23437860-23438373	NONHSAT063868
24	lnc-AC092329.1-1	chr19:23456878-23457053	NONHSAT063867
25	lnc-AC092329.1-1	chr19:23444422-23444546	NONHSAT063877
26	lnc-AC092329.1-1	chr19:23443533-23443736	ENSG00000213971.3
27	lnc-AC092329.1-1	chr19:23444422-23444546	NONHSAT063867
28	lnc-AC092329.1-1	chr19:23443666-23443738	NONHSAT063877
29	lnc-AC092329.1-1	chr19:23453020-23453094	ENSG00000269107.1
30	lnc-AC092329.1-1	chr19:23456878-23457049	ENSG00000213971.3
31	lnc-AC092329.1-1	chr19:23443666-23443736	XLOC_013274
32	lnc-AC092329.1-1	chr19:23443666-23443736	NONHSAT063867
33	lnc-AC092329.1-1	chr19:23437856-23442918	NONHSAT063866
34	lnc-ZNF730-10	chr19:23471422-23472147	NONHSAT063883
35	lnc-AC092329.1-1	chr19:23444422-23445436	ENSG00000213971.3
36	lnc-AC092329.1-1	chr19:23456878-23456979	XLOC_013274
37	lnc-AC092329.1-1	chr19:23444026-23446676	ENSG00000213971.3
38	lnc-ZNF724P-3	chr19:23414068-23414163	NR_045525
39	lnc-AC092329.1-1	chr19:23442803-23442918	ENSG00000213971.3
40	lnc-AC092329.1-1	chr19:23441500-23442918	NONHSAT063868
41	lnc-ZNF724P-3	chr19:23406607-23406820	NR_045525
42	lnc-AC092329.1-1	chr19:23444422-23444546	ENSG00000213971.3
43	lnc-AC092329.1-1	chr19:23437855-23440741	NONHSAT063865
44	lnc-AC092329.1-1	chr19:23443666-23443736	NONHSAT063868
45	lnc-AC092329.1-1	chr19:23443666-23443736	XLOC_013274
46	lnc-AC092329.1-1	chr19:23442763-23443736	ENSG00000213971.3
47	lnc-AC092329.1-1	chr19:23456878-23457032	NONHSAT063868
48	lnc-AC092329.1-1	chr19:23441006-23443055	XLOC_013274
49	lnc-AC092329.1-1	chr19:23441500-23442918	XLOC_013274
50	lnc-AC092329.1-1	chr19:23453020-23453094	NONHSAT063867

No data

Variant related genes	Relation type
ZNF724P	TF binding region
ENSG00000213971	TF binding region
ENSG00000221478	TF binding region
ENSG00000269471	TF binding region
ENSG00000269107	TF binding region
ENSG00000269837	TF binding region
VN1R91P	TF binding region
VN1R90P	TF binding region
ENSG00000268469	TF binding region
ZNF724P	CpG island
ENSG00000213971	CpG island
ENSG00000221478	CpG island
ENSG00000269471	CpG island
ENSG00000269107	CpG island
ENSG00000269837	CpG island
VN1R91P	CpG island
VN1R90P	CpG island
ENSG00000268469	CpG island
ENSG00000213096	chromatin interactions
ENSG00000268362	chromatin interactions
ENSG00000196081	chromatin interactions
ENSG00000215417	chromatin interactions
ENSG00000213971	chromatin interactions
ENSG00000269837	chromatin interactions
KIF16B	miRNA target sites
TES	miRNA target sites
HECTD2	miRNA target sites

Extended variants
information (count: 4564 )
Associated
traits (count: 44 )

Variant overlapped rSNPs/rCNVs (count:4564 , 50 per page) page: 1 2 3 4 5 6 7 ... 92

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs181946251	chr19:23361427-23361428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs2362141	chr19:23361475-23361476	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs539334733	chr19:23361484-23361485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs557329832	chr19:23361525-23361526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs566702357	chr19:23361534-23361535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536672238	chr19:23361564-23361565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs370577768	chr19:23361568-23361569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs2087539	chr19:23361583-23361584	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs541338782	chr19:23361585-23361586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs184725703	chr19:23361591-23361592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs2362142	chr19:23361606-23361607	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs573033646	chr19:23361631-23361632	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs115520042	chr19:23361642-23361643	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs559518370	chr19:23361684-23361685	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs368280643	chr19:23361694-23361695	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs529370566	chr19:23361696-23361697	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs116020131	chr19:23361730-23361731	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs188457325	chr19:23361743-23361744	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs118176226	chr19:23361752-23361753	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs114650067	chr19:23361769-23361770	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs180844626	chr19:23361771-23361772	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs534731146	chr19:23361828-23361829	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs117579517	chr19:23361830-23361831	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs186487335	chr19:23361864-23361865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs147337388	chr19:23361868-23361869	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs2362143	chr19:23361873-23361874	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs141022109	chr19:23361874-23361875	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs569231502	chr19:23361924-23361925	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs191518908	chr19:23361949-23361950	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs554570223	chr19:23361978-23361979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs181159807	chr19:23361984-23361985	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs540341174	chr19:23361993-23361994	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs565190350	chr19:23362012-23362013	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs8112978	chr19:23362014-23362015	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs142433321	chr19:23362019-23362020	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs187013906	chr19:23362021-23362022	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs78634488	chr19:23362031-23362032	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs78807790	chr19:23362034-23362035	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs563484184	chr19:23362094-23362095	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs76121619	chr19:23362096-23362097	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs530855073	chr19:23362097-23362098	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs115603434	chr19:23362120-23362121	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs560883266	chr19:23362147-23362148	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs528050951	chr19:23362148-23362149	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs546677834	chr19:23362173-23362174	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs151303325	chr19:23362191-23362192	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs140533431	chr19:23362216-23362217	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs550926375	chr19:23362249-23362250	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs569085661	chr19:23362261-23362262	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs540455280	chr19:23362265-23362266	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2308 , 50 per page) page: 1 2 3 4 5 6 7 ... 47

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:23360800-23361600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:23361600-23371600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:23362400-23362600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr19:23362600-23363400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr19:23363400-23363600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr19:23363600-23364200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr19:23364200-23364400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr19:23364400-23369600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr19:23366600-23366800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:23386000-23386800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr19:23386200-23386600	Active TSS	Brain Anterior Caudate	brain
12	chr19:23386400-23386600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr19:23386400-23386600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:23386400-23386600	Enhancers	Fetal Muscle Trunk	muscle
15	chr19:23386400-23386600	Enhancers	Ovary	ovary
16	chr19:23386400-23387200	Active TSS	Primary hematopoietic stem cells	blood
17	chr19:23386400-23387200	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr19:23386400-23387400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr19:23386600-23386800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
20	chr19:23386600-23386800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr19:23386600-23386800	Active TSS	Right Ventricle	heart
22	chr19:23386600-23387000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr19:23386600-23387000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr19:23386600-23387000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:23386600-23387000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr19:23386600-23387000	Enhancers	Aorta	Aorta
27	chr19:23386600-23387000	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr19:23386600-23387000	Active TSS	Colon Smooth Muscle	Colon
29	chr19:23386600-23387000	Flanking Active TSS	Fetal Muscle Trunk	muscle
30	chr19:23386600-23387000	ZNF genes & repeats	Gastric	stomach
31	chr19:23386600-23387000	Flanking Bivalent TSS/Enh	Left Ventricle	heart
32	chr19:23386600-23387000	Flanking Active TSS	Ovary	ovary
33	chr19:23386600-23387000	ZNF genes & repeats	Pancreas	Pancrea
34	chr19:23386600-23387000	Active TSS	Psoas Muscle	Psoas
35	chr19:23386600-23387200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr19:23386600-23387200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr19:23386600-23387200	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr19:23386600-23387200	ZNF genes & repeats	Brain Anterior Caudate	brain
39	chr19:23386600-23387200	Active TSS	Brain Hippocampus Middle	brain
40	chr19:23386600-23387200	ZNF genes & repeats	Esophagus	oesophagus
41	chr19:23386600-23387200	ZNF genes & repeats	Lung	lung
42	chr19:23386600-23387200	Active TSS	Right Atrium	heart
43	chr19:23386600-23387200	Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr19:23386600-23387200	Active TSS	Stomach Smooth Muscle	stomach
45	chr19:23386600-23387200	Active TSS	Osteobl	bone
46	chr19:23386600-23387400	Active TSS	Adipose Nuclei	Adipose
47	chr19:23386600-23387400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
48	chr19:23386800-23387000	Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr19:23386800-23387000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr19:23386800-23387000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links