Variant report

Variant	esv3446269
Chromosome Location	chr19:21084712-21097310
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21086946..21088802-chr19:21210415..21213328,2	MCF-7	breast:

Extended variants
information (count: 555 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:555 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529870612	chr19:21085835-21085836	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs374678227	chr19:21085838-21085839	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs7260618	chr19:21085869-21085870	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs569751203	chr19:21085896-21085897	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs538317152	chr19:21085959-21085960	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs7245474	chr19:21085979-21085980	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs181234966	chr19:21085989-21085990	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs534593134	chr19:21085994-21085995	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs554540826	chr19:21086009-21086010	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs561813129	chr19:21086014-21086015	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs531022747	chr19:21086125-21086126	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs149509778	chr19:21086137-21086138	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs536859982	chr19:21086153-21086154	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs556445448	chr19:21086183-21086184	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs551528973	chr19:21086630-21086631	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs539212563	chr19:21086639-21086640	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs144007049	chr19:21086649-21086650	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs35142954	chr19:21086670-21086671	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs541046582	chr19:21086671-21086672	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs554505070	chr19:21086676-21086677	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs140035818	chr19:21086713-21086714	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs149854643	chr19:21086730-21086731	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs563591984	chr19:21086746-21086747	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs377117126	chr19:21086779-21086780	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs139241014	chr19:21086803-21086804	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs532242675	chr19:21086804-21086805	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs559031944	chr19:21086806-21086807	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs189165560	chr19:21086814-21086815	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs528159446	chr19:21086846-21086847	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs145789520	chr19:21086906-21086907	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs568012270	chr19:21086920-21086921	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs530523151	chr19:21086925-21086926	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs116075942	chr19:21086926-21086927	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs141774639	chr19:21086950-21086951	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs570311424	chr19:21086974-21086975	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs145414215	chr19:21086982-21086983	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs552707776	chr19:21086993-21086994	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs34079526	chr19:21086999-21087000	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs571520373	chr19:21087027-21087028	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs374865226	chr19:21087139-21087140	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs192027864	chr19:21087157-21087158	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs112147350	chr19:21087166-21087167	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs574535597	chr19:21087175-21087176	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs535411328	chr19:21087250-21087251	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs35096068	chr19:21087261-21087262	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs67168634	chr19:21087263-21087264	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs147703209	chr19:21087282-21087283	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs116392907	chr19:21087336-21087337	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs577040892	chr19:21087383-21087384	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs545696296	chr19:21087403-21087404	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21085800-21086200	ZNF genes & repeats	Pancreas	Pancrea
2	chr19:21086600-21087800	ZNF genes & repeats	Fetal Brain Male	brain
3	chr19:21087800-21095400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:21089400-21090200	ZNF genes & repeats	Pancreas	Pancrea
5	chr19:21089600-21090000	ZNF genes & repeats	Fetal Heart	heart
6	chr19:21089800-21090600	ZNF genes & repeats	Liver	Liver
7	chr19:21090000-21090400	Weak transcription	Fetal Heart	heart
8	chr19:21090400-21091000	Active TSS	Fetal Heart	heart
9	chr19:21091800-21094000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr19:21093600-21097000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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