Variant report

Variant	esv3446501
Chromosome Location	chr3:87728862-87732360
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 133 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:133 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551579524	chr3:87728885-87728886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs570268675	chr3:87728889-87728890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs537254277	chr3:87728890-87728891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs555493648	chr3:87728893-87728894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs11505025	chr3:87728930-87728931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs567641066	chr3:87728967-87728968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs11127998	chr3:87728974-87728975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs11505026	chr3:87728975-87728976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs11127999	chr3:87728984-87728985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs145930663	chr3:87729006-87729007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs552583068	chr3:87729071-87729072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs111472588	chr3:87729092-87729093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs11128000	chr3:87729093-87729094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs191627806	chr3:87729098-87729099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs184215134	chr3:87729102-87729103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs113819027	chr3:87729105-87729106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs542867918	chr3:87729106-87729107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs557624176	chr3:87729156-87729157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs11128001	chr3:87729164-87729165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs561033809	chr3:87729204-87729205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs528432562	chr3:87729207-87729208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs188147786	chr3:87729208-87729209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs559742354	chr3:87729227-87729228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs149742010	chr3:87729242-87729243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs551709607	chr3:87729245-87729246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs374898788	chr3:87729257-87729258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs144564051	chr3:87729275-87729276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs549181289	chr3:87729282-87729283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs567504088	chr3:87729314-87729315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs148455127	chr3:87729318-87729319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs112659636	chr3:87729319-87729320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs571870392	chr3:87729320-87729321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs538259754	chr3:87729323-87729324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs556891253	chr3:87729352-87729353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs371336605	chr3:87729394-87729395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs575261498	chr3:87729403-87729404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs542730942	chr3:87729405-87729406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs553435653	chr3:87729452-87729453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs554833725	chr3:87729453-87729454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs375582924	chr3:87729460-87729461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs540572413	chr3:87729471-87729472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs368639952	chr3:87729494-87729495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs371677174	chr3:87729507-87729508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs545094747	chr3:87729512-87729513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs147906259	chr3:87729529-87729530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs545042692	chr3:87729564-87729565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs564934574	chr3:87729593-87729594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs201626451	chr3:87729670-87729671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs145368473	chr3:87729678-87729679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576874903	chr3:87729705-87729706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Non-small cell lung cancer	21829676	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87728800-87732000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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