Variant report

Variant	esv3447768
Chromosome Location	chr13:88637000-88673742
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:88332679..88333285-chr13:88652174..88653031,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-17	chr13:88665151-88665582	NONHSAT034606
2	lnc-SLITRK6-17	chr13:88670789-88670814	NONHSAT034606
3	lnc-SLITRK6-17	chr13:88666229-88666396	NONHSAT034606
4	lnc-SLITRK6-17	chr13:88668490-88668550	NONHSAT034606
5	lnc-SLITRK6-17	chr13:88668490-88668550	NONHSAT034605
6	lnc-SLITRK6-17	chr13:88669827-88669964	NONHSAT034605
7	lnc-SLITRK6-17	chr13:88670789-88670814	NONHSAT034605
8	lnc-SLITRK6-17	chr13:88665102-88665582	NONHSAT034605

No data

Extended variants
information (count: 858 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:858 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191762282	chr13:88650457-88650458	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs142949262	chr13:88650464-88650465	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs539853588	chr13:88650492-88650493	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs114119943	chr13:88650519-88650520	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs569836316	chr13:88650560-88650561	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs537212902	chr13:88650591-88650592	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs151114627	chr13:88650613-88650614	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs573949491	chr13:88650631-88650632	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs111708733	chr13:88650646-88650647	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs553670032	chr13:88650647-88650648	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs577551964	chr13:88650699-88650700	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs545017779	chr13:88650712-88650713	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs141117413	chr13:88650718-88650719	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs530641026	chr13:88650760-88650761	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs78002071	chr13:88650767-88650768	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs561069320	chr13:88650808-88650809	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs528326813	chr13:88650824-88650825	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs117438145	chr13:88650847-88650848	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs183108481	chr13:88650898-88650899	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs185364553	chr13:88650916-88650917	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs550811990	chr13:88650941-88650942	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs551375305	chr13:88650977-88650978	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs569772733	chr13:88650998-88650999	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs147554447	chr13:88651012-88651013	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs559571453	chr13:88651028-88651029	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs573035849	chr13:88651029-88651030	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs555487582	chr13:88651032-88651033	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs569306798	chr13:88651033-88651034	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs567510642	chr13:88651066-88651067	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs535256987	chr13:88651118-88651119	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs553369640	chr13:88651125-88651126	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs545115964	chr13:88651131-88651132	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs189785981	chr13:88651164-88651165	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs544645895	chr13:88651173-88651174	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs557007808	chr13:88651182-88651183	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs564911904	chr13:88651295-88651296	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs28895980	chr13:88651301-88651302	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs373476988	chr13:88651302-88651303	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs575367345	chr13:88651337-88651338	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs542732827	chr13:88651368-88651369	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs560997604	chr13:88651401-88651402	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs536274951	chr13:88651429-88651430	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs530819461	chr13:88651447-88651448	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs548161851	chr13:88651494-88651495	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs141973957	chr13:88651500-88651501	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs145824916	chr13:88651515-88651516	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs532444273	chr13:88651609-88651610	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs182077594	chr13:88651634-88651635	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs187775441	chr13:88651635-88651636	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs138458935	chr13:88651658-88651659	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-small cell lung cancer	16651412	CNVD

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88650400-88650800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:88650400-88650800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:88650400-88651200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:88650800-88652200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:88651200-88651400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:88651200-88651400	Weak transcription	HSMM	muscle
7	chr13:88651200-88652800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:88651200-88653000	Enhancers	NH-A	brain
9	chr13:88651400-88652800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:88651400-88652800	Enhancers	HSMMtube	muscle
11	chr13:88651400-88653000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr13:88651400-88653000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr13:88651400-88653400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:88651400-88653600	Enhancers	HSMM	muscle
15	chr13:88651400-88653800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:88651600-88652400	Enhancers	HMEC	breast
17	chr13:88651600-88652600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:88651600-88652600	Enhancers	NHEK	skin
19	chr13:88652000-88652400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr13:88652000-88652800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:88652200-88653400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:88652200-88653600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:88652400-88653000	Enhancers	NHLF	lung
24	chr13:88652800-88653000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr13:88652800-88657200	Weak transcription	HSMMtube	muscle
26	chr13:88653400-88670400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:88653600-88657200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr13:88657200-88658000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr13:88657200-88658400	Enhancers	HSMMtube	muscle
30	chr13:88658000-88658400	ZNF genes & repeats	Spleen	Spleen
31	chr13:88666600-88667400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr13:88666800-88667600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr13:88673000-88675000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr13:88673200-88673800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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