Variant report

Variant	esv3448254
Chromosome Location	chr6:77731633-77735331
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-15	chr6:77731337-77731835	NONHSAT113650

Extended variants
information (count: 169 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:169 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375608039	chr6:77731646-77731647	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs10806080	chr6:77731663-77731664	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs533643865	chr6:77731664-77731665	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs375126335	chr6:77731693-77731694	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs571771891	chr6:77731699-77731700	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs556471528	chr6:77731712-77731713	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs568280046	chr6:77731732-77731733	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs371905431	chr6:77731761-77731762	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs192148392	chr6:77731768-77731769	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs146343119	chr6:77731798-77731799	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs572151685	chr6:77731808-77731809	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs545569518	chr6:77731817-77731818	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs7748389	chr6:77731820-77731821	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs10943403	chr6:77731829-77731830	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs570195465	chr6:77731843-77731844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs7772246	chr6:77731845-77731846	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs544526433	chr6:77731857-77731858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs79951519	chr6:77731880-77731881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs530308220	chr6:77731903-77731904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs150999881	chr6:77731913-77731914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs534315977	chr6:77731916-77731917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs542455812	chr6:77731924-77731925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs560512756	chr6:77732011-77732012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs527796472	chr6:77732022-77732023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs184066334	chr6:77732036-77732037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs570883287	chr6:77732038-77732039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs139634091	chr6:77732058-77732059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs188993917	chr6:77732059-77732060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs192442736	chr6:77732087-77732088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs535380068	chr6:77732089-77732090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs534350693	chr6:77732148-77732149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs544160087	chr6:77732159-77732160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs184355377	chr6:77732161-77732162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs557539566	chr6:77732179-77732180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs115573419	chr6:77732215-77732216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs575900355	chr6:77732239-77732240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs7752644	chr6:77732280-77732281	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs574833737	chr6:77732282-77732283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs150002975	chr6:77732329-77732330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs564491297	chr6:77732343-77732344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs557818861	chr6:77732347-77732348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs560741314	chr6:77732360-77732361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs57433966	chr6:77732363-77732364	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs60911231	chr6:77732365-77732366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs564607699	chr6:77732434-77732435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs9352424	chr6:77732513-77732514	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs550242724	chr6:77732538-77732539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs74856433	chr6:77732539-77732540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs529195919	chr6:77732553-77732554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs74629088	chr6:77732561-77732562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77725200-77736000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:77731400-77731800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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