Variant report
| Variant | esv3449236 |
|---|---|
| Chromosome Location | chr11:57806260-57806693 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs141059630 | chr11:57806291-57806292 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs201012066 | chr11:57806307-57806308 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs542935836 | chr11:57806316-57806317 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs533346369 | chr11:57806378-57806379 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs552029686 | chr11:57806450-57806451 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs370124562 | chr11:57806453-57806454 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs560692442 | chr11:57806456-57806457 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs527348901 | chr11:57806512-57806513 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs549111448 | chr11:57806522-57806523 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs567107591 | chr11:57806537-57806538 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs374512334 | chr11:57806584-57806585 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs183487698 | chr11:57806606-57806607 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs537894742 | chr11:57806607-57806608 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs367605632 | chr11:57806633-57806634 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs553216996 | chr11:57806651-57806652 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs573107599 | chr11:57806692-57806693 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:51)
| Disease | PMID | Source |
|---|---|---|
| Wilms tumour | 21544195 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Autism | 22495311 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Non-small cell lung cancer | 21385341 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Glioblastoma multiforme | 21138945 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Cancer | 21637783 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Chronic lymphocytic leukemia | 21795749 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Neuroblastoma | 21484798 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 20837533 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Cervical cancer | 21063398 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Neuroblastoma | 18923524 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Multiple myeloma | 17077331 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Breast cancer | 21364760 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Pituitary adenoma | 18645599 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Smith-Lemli-Opitz syndrome | 21572526 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Cancer | 16751803 | CNVD |
| Seminomas | 18059402 | CNVD |
| Autism | 22495309 | CNVD |
| Autism | 20808228 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:57792000-57811400 | Weak transcription | Right Atrium | heart |
| 2 | chr11:57799200-57808200 | Weak transcription | Pancreas | Pancrea |
| 3 | chr11:57799400-57808400 | Weak transcription | Lung | lung |
