Variant report

Variant	esv3449683
Chromosome Location	chr10:82972143-83304804
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:37)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:37 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:83184138..83185730-chr10:83186602..83188404,2	MCF-7	breast:
2	chr10:83086678..83089633-chr10:83090595..83092763,2	MCF-7	breast:
3	chr10:83169442..83171597-chr10:83174535..83176975,2	K562	blood:
4	chr10:83257478..83259594-chr10:83260723..83262916,2	MCF-7	breast:
5	chr10:83166292..83168254-chr10:83168620..83171588,2	K562	blood:
6	chr10:83272245..83276354-chr10:83281692..83284767,3	MCF-7	breast:
7	chr10:83240127..83242125-chr10:83244637..83246199,2	MCF-7	breast:
8	chr10:83273413..83276377-chr10:83278603..83280338,2	K562	blood:
9	chr10:83064072..83066890-chr10:83070171..83074238,3	K562	blood:
10	chr10:83169207..83171980-chr10:83171982..83173931,2	MCF-7	breast:
11	chr10:83064072..83066890-chr10:83070171..83074238,3	K562	blood:
12	chr10:83169442..83171597-chr10:83174535..83176975,2	K562	blood:
13	chr10:83173594..83174407-chr10:83579945..83580809,6	MCF-7	breast:
14	chr10:83272245..83276354-chr10:83281692..83284767,3	MCF-7	breast:
15	chr10:82459149..82460018-chr10:83107533..83108261,2	MCF-7	breast:
16	chr10:83139370..83142179-chr10:83143741..83145936,3	K562	blood:
17	chr10:83086678..83089633-chr10:83090595..83092763,2	MCF-7	breast:
18	chr10:83187635..83190327-chr10:83192478..83195276,2	K562	blood:
19	chr10:83240127..83242125-chr10:83244637..83246199,2	MCF-7	breast:
20	chr10:83108354..83111179-chr10:83112427..83114161,2	MCF-7	breast:
21	chr10:83184138..83185730-chr10:83186602..83188404,2	MCF-7	breast:
22	chr10:83187635..83190327-chr10:83192478..83195276,2	K562	blood:
23	chr10:83169207..83171980-chr10:83171982..83173931,2	MCF-7	breast:
24	chr10:83108354..83111179-chr10:83112427..83114161,2	MCF-7	breast:
25	chr10:83257478..83259594-chr10:83260723..83262916,2	MCF-7	breast:
26	chr10:82987503..82989030-chr10:82989296..82992206,2	K562	blood:
27	chr10:83215519..83216361-chr16:146667..147520,2	MCF-7	breast:
28	chr10:83166292..83168254-chr10:83168620..83171588,2	K562	blood:
29	chr10:83173793..83174788-chr10:83579814..83580608,4	MCF-7	breast:
30	chr10:82987503..82989030-chr10:82989296..82992206,2	K562	blood:
31	chr10:83173421..83174486-chr10:83598404..83599300,4	MCF-7	breast:
32	chr10:83168055..83170471-chr10:83172964..83175502,2	K562	blood:
33	chr10:83187635..83190480-chr10:83192191..83193978,2	K562	blood:
34	chr10:83168055..83170471-chr10:83172964..83175502,2	K562	blood:
35	chr10:83273413..83276377-chr10:83278603..83280338,2	K562	blood:
36	chr10:83187635..83190480-chr10:83192191..83193978,2	K562	blood:
37	chr10:83139370..83142179-chr10:83143741..83145936,3	K562	blood:

No data

Extended variants
information (count: 2067 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:2067 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12355292	chr10:82972870-82972871	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs541496238	chr10:82972877-82972878	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs11188890	chr10:82972925-82972926	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs527436734	chr10:82972941-82972942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs146036796	chr10:82972964-82972965	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs566981683	chr10:82972998-82972999	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs562131312	chr10:82973000-82973001	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs188980138	chr10:82973028-82973029	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs569250195	chr10:82973050-82973051	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs373734678	chr10:82973054-82973055	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs117491017	chr10:82973059-82973060	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs74993667	chr10:82973067-82973068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs181421173	chr10:82973105-82973106	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs561598400	chr10:82973141-82973142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs553908433	chr10:82973146-82973147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs576995571	chr10:82973216-82973217	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs569906489	chr10:82973279-82973280	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs139954197	chr10:82973307-82973308	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs11818888	chr10:82973309-82973310	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs575584736	chr10:82973325-82973326	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs541433056	chr10:82973337-82973338	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs548975806	chr10:82973356-82973357	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs151190602	chr10:82973374-82973375	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs527360408	chr10:82973402-82973403	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs566059095	chr10:82973412-82973413	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs540803056	chr10:82973471-82973472	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs560704604	chr10:82973472-82973473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs200852915	chr10:82973510-82973511	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs532777367	chr10:82973514-82973515	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs552858711	chr10:82973577-82973578	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs563187155	chr10:82973585-82973586	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs552883850	chr10:82973594-82973595	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs140245276	chr10:82973617-82973618	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs149902955	chr10:82973645-82973646	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs185658213	chr10:82973678-82973679	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs565951488	chr10:82973679-82973680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs547599497	chr10:82973698-82973699	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs376986358	chr10:82973700-82973701	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs191251285	chr10:82973720-82973721	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs570597731	chr10:82973721-82973722	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs377448152	chr10:82973751-82973752	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs555997730	chr10:82973765-82973766	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs575929278	chr10:82973773-82973774	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs75976572	chr10:82973819-82973820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs111462364	chr10:82973870-82973871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372402434	chr10:82973937-82973938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs117065351	chr10:82973938-82973939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs571962665	chr10:82973976-82973977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs180962690	chr10:82973996-82973997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs7082660	chr10:82974041-82974042	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:82972800-82973800	Enhancers	Liver	Liver
2	chr10:82973800-82977400	Weak transcription	Liver	Liver
3	chr10:82974800-82976000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:82975000-82975400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:82975000-82976000	Enhancers	Adipose Nuclei	Adipose
6	chr10:82975000-82976400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:82977400-82978400	Enhancers	Liver	Liver
8	chr10:82980200-82981200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:82980800-82981200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:82998000-82999200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:82998400-82999200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr10:83008600-83009000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:83008600-83009400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr10:83008600-83009400	Enhancers	Fetal Kidney	kidney
15	chr10:83008600-83012600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:83009000-83009800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr10:83009200-83009400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:83009200-83012600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr10:83009400-83010000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:83009400-83010200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:83009400-83011800	Weak transcription	Fetal Kidney	kidney
22	chr10:83009800-83010200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:83009800-83011400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr10:83010000-83011000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr10:83010200-83010800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr10:83010200-83011000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr10:83010400-83010600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr10:83010400-83010600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr10:83010400-83010600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:83010400-83010800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr10:83010400-83010800	Enhancers	Placenta Amnion	Placenta Amnion
32	chr10:83010400-83012600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr10:83010600-83011000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr10:83010600-83011800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:83010800-83011800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr10:83010800-83011800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:83010800-83011800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr10:83010800-83012000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:83011000-83011200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr10:83011000-83011600	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr10:83011000-83011800	Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr10:83011200-83011600	Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr10:83011400-83012000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr10:83011600-83012200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr10:83011600-83012400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr10:83011800-83012000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr10:83011800-83012000	Enhancers	Fetal Kidney	kidney
48	chr10:83011800-83012200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr10:83011800-83012200	Enhancers	Placenta Amnion	Placenta Amnion
50	chr10:83011800-83012400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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