Variant report

Variant	esv3450249
Chromosome Location	chr6:160975512-160977610
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:107 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73012302	chr6:160975548-160975549	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs534108956	chr6:160975558-160975559	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs182882624	chr6:160975575-160975576	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs141742152	chr6:160975599-160975600	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556179358	chr6:160975600-160975601	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs550739912	chr6:160975626-160975627	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs34498812	chr6:160975629-160975630	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs150044916	chr6:160975644-160975645	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs145364000	chr6:160975653-160975654	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs572380619	chr6:160975654-160975655	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs541371781	chr6:160975657-160975658	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs564129279	chr6:160975673-160975674	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186705953	chr6:160975674-160975675	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs545525848	chr6:160975681-160975682	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs533115335	chr6:160975709-160975710	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs549766348	chr6:160975732-160975733	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs563769418	chr6:160975735-160975736	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529404075	chr6:160975752-160975753	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs372107122	chr6:160975789-160975790	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs568211516	chr6:160975800-160975801	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs113710410	chr6:160975849-160975850	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs534073573	chr6:160975877-160975878	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs547677411	chr6:160975909-160975910	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs570763676	chr6:160975928-160975929	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539414628	chr6:160975952-160975953	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs149209113	chr6:160975979-160975980	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs576070183	chr6:160975987-160975988	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs535222833	chr6:160976030-160976031	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs191537097	chr6:160976084-160976085	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs143397923	chr6:160976109-160976110	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs9364559	chr6:160976148-160976149	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs564390506	chr6:160976197-160976198	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs9457937	chr6:160976199-160976200	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs561110147	chr6:160976262-160976263	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs533211549	chr6:160976270-160976271	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs71741519	chr6:160976289-160976290	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs563561786	chr6:160976322-160976323	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs369117578	chr6:160976326-160976327	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs10552460	chr6:160976327-160976328	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs368486989	chr6:160976355-160976356	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs79776968	chr6:160976359-160976360	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs148286601	chr6:160976389-160976390	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs559809255	chr6:160976421-160976422	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs527438248	chr6:160976442-160976443	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs547636710	chr6:160976452-160976453	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs71864882	chr6:160976469-160976470	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs547899027	chr6:160976470-160976471	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs200127199	chr6:160976485-160976486	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs62441902	chr6:160976487-160976488	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112444533	chr6:160976496-160976497	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17850661	CNVD
Renal cell carcinoma	18765545	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Coronary artery disease	17160897	CNVD
Chordoma	18071362	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21509527	CNVD
Coronary Disease	20032323	CNVD
Coronary Disease	20335594	CNVD
Breast cancer	22522925	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Recurrent pregnancy loss	19789632	CNVD
Autism	21865298	CNVD
Schizophrenia	23813976	CNVD
Carotid artery disease	21127300	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160954400-160981000	Strong transcription	Liver	Liver
2	chr6:160975200-160977800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links