Variant report
Variant | esv3450658 |
---|---|
Chromosome Location | chr15:54581760-54584958 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs530945143 | chr15:54581764-54581765 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs184117147 | chr15:54581842-54581843 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs545827481 | chr15:54581876-54581877 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs138326436 | chr15:54581882-54581883 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs189524152 | chr15:54581895-54581896 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs542066354 | chr15:54581911-54581912 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs373549833 | chr15:54581924-54581925 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs530727321 | chr15:54581967-54581968 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs143846728 | chr15:54582002-54582003 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs147238712 | chr15:54582030-54582031 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs533219757 | chr15:54582050-54582051 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs546611220 | chr15:54582061-54582062 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs116159628 | chr15:54582133-54582134 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs192439546 | chr15:54582137-54582138 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs140617067 | chr15:54582151-54582152 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs184835965 | chr15:54582161-54582162 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs576537331 | chr15:54582191-54582192 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs149313871 | chr15:54582246-54582247 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs558347514 | chr15:54582282-54582283 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs8038466 | chr15:54582346-54582347 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
21 | rs539489940 | chr15:54582348-54582349 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs189601847 | chr15:54582364-54582365 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs376735775 | chr15:54582380-54582381 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs568279809 | chr15:54582446-54582447 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs144570995 | chr15:54582475-54582476 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs74015126 | chr15:54582506-54582507 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
27 | rs117118730 | chr15:54582525-54582526 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs575384880 | chr15:54582572-54582573 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs544018578 | chr15:54582580-54582581 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs563911888 | chr15:54582590-54582591 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs533257155 | chr15:54582620-54582621 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs148454954 | chr15:54582636-54582637 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs560327695 | chr15:54582637-54582638 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs142579133 | chr15:54582649-54582650 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs145964765 | chr15:54582677-54582678 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs569547874 | chr15:54582736-54582737 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs538125447 | chr15:54582777-54582778 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs12900325 | chr15:54582794-54582795 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
39 | rs139847860 | chr15:54582831-54582832 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs181574745 | chr15:54582870-54582871 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs557328133 | chr15:54582883-54582884 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs553099603 | chr15:54582902-54582903 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs572777630 | chr15:54582937-54582938 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs531116618 | chr15:54582940-54582941 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs187164406 | chr15:54582941-54582942 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs143169386 | chr15:54582946-54582947 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs146652733 | chr15:54582950-54582951 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs34789917 | chr15:54582969-54582970 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs189390165 | chr15:54582990-54582991 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs557543052 | chr15:54583033-54583034 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Ewing''s sarcoma | 21437220 | CNVD |
Schizophrenia | 19415332 | CNVD |
Breast cancer | 22522925 | CNVD |
Autism | 22495311 | CNVD |
Wilms tumour | 21544195 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
cataract | 16735990 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Medulloblastoma | 21979893 | CNVD |
spastic paraplegia with thinning of corpus callosum | 19105190 | CNVD |
Schizophrenia | 21324950 | CNVD |
Astrocytoma | 17387387 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Disease | 21824424 | CNVD |
Melanoma | 18172304 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Gastric cancer | 17167181 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Intellectual disability | 22102821 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Prostate cancer | 16573809 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Multiple myeloma | 20724749 | CNVD |
Lung cancer | 18438408 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Prostate cancer | 18632612 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Breast cancer | 22032731 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Cancer | 21129771 | CNVD |
Breast cancer | 16272173 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Abnormal phenotypes | 18644119 | CNVD |
Cancer | 16751803 | CNVD |
Esophageal adenocarcinoma | 18820669 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Acute monocytic leukemia | 16498392 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Breast cancer | 17133270 | CNVD |
Breast cancer | 21509527 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:54547000-54652600 | Weak transcription | Fetal Lung | lung |