Variant report

Variant	esv3451258
Chromosome Location	chr9:25664001-25688182
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:366)
CpG islands
(count:427)
Chromatin interactive
region (count:17)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:366 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr9:25678147-25678745	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr9:25677405-25677839	H1-hESC	embryonic stem cell:	n/a	n/a
3	BRCA1	chr9:25678407-25679312	Hela-S3	cervix:	n/a	n/a
4	CEBPB	chr9:25666098-25666362	HepG2	liver:	n/a	chr9:25666200-25666211
5	CEBPB	chr9:25666055-25666383	IMR90	lung:	n/a	chr9:25666200-25666211
6	CEBPB	chr9:25678176-25678775	Hela-S3	cervix:	n/a	n/a
7	CEBPB	chr9:25681220-25681666	IMR90	lung:	n/a	n/a
8	CEBPB	chr9:25681212-25681662	Hela-S3	cervix:	n/a	n/a
9	CEBPB	chr9:25679751-25679806	H1-hESC	embryonic stem cell:	n/a	n/a
10	CHD2	chr9:25677459-25678649	H1-hESC	embryonic stem cell:	n/a	n/a
11	CHD2	chr9:25677326-25678785	Hela-S3	cervix:	n/a	n/a
12	CREB1	chr9:25677450-25677708	A549	lung:	n/a	n/a
13	CTCF	chr9:25678300-25678450	HRPEpiC	eye:	n/a	chr9:25678431-25678444
14	CTCF	chr9:25677480-25677630	HRE	kidney:	n/a	n/a
15	CTCF	chr9:25677506-25677568	A549	lung:	n/a	n/a
16	CTCF	chr9:25678500-25678650	BJ	skin:	n/a	n/a
17	CTCF	chr9:25678520-25678670	NHDF-neo	bronchial:	n/a	n/a
18	CTCF	chr9:25678220-25678370	HCPEpiC	choroid plexus:	n/a	n/a
19	CTCF	chr9:25678216-25678303	Pancreas_OC	pancreas:	n/a	n/a
20	CTCF	chr9:25678235-25678346	MCF-7	breast:	n/a	n/a
21	CTCF	chr9:25678460-25678610	HPF	lung:	n/a	n/a
22	CTCF	chr9:25678460-25678610	HEK293	kidney:	n/a	n/a
23	CTCF	chr9:25678520-25678670	NHEK	skin:	n/a	n/a
24	CTCF	chr9:25678400-25678550	HPAF	blood vessel:	n/a	chr9:25678431-25678444
25	CTCF	chr9:25678520-25678670	AG04449	skin:	n/a	n/a
26	CTCF	chr9:25678440-25678590	HBMEC	blood vessel:	n/a	n/a
27	CTCF	chr9:25678500-25678650	HCFaa	heart:	n/a	n/a
28	CTCF	chr9:25678242-25678341	Lung_OC	lung:	n/a	n/a
29	CTCF	chr9:25678180-25678330	AoAF	blood vessel:	n/a	n/a
30	CTCF	chr9:25678247-25678364	MCF-7	breast:	n/a	n/a
31	CTCF	chr9:25677505-25677592	Lung_OC	lung:	n/a	n/a
32	CTCF	chr9:25678281-25678324	Fibrobl	skin:	n/a	n/a
33	CTCF	chr9:25677498-25677502	A549	lung:	n/a	n/a
34	CTCF	chr9:25678480-25678630	SAEC	small airway:	n/a	n/a
35	CTCF	chr9:25678420-25678570	HCM	heart:	n/a	chr9:25678431-25678444
36	CTCF	chr9:25678420-25678570	AG04449	skin:	n/a	chr9:25678431-25678444
37	CTCF	chr9:25677453-25677545	MCF-7	breast:	n/a	n/a
38	CTCF	chr9:25678484-25678657	MCF-7	breast:	n/a	n/a
39	CTCF	chr9:25675220-25675370	HPF	lung:	n/a	n/a
40	CTCF	chr9:25678469-25678550	Fibrobl	skin:	n/a	n/a
41	CTCF	chr9:25678180-25678330	HUVEC	blood vessel:	n/a	n/a
42	CTCF	chr9:25678440-25678590	SK-N-SH_RA	brain:	n/a	n/a
43	CTCF	chr9:25678252-25678345	MCF-7	breast:	n/a	n/a
44	CTCF	chr9:25678482-25678578	MCF-7	breast:	n/a	n/a
45	CTCF	chr9:25678222-25678305	H1-hESC	embryonic stem cell:	n/a	n/a
46	CTCF	chr9:25678620-25678770	HEEpiC	esophagus:	n/a	n/a
47	CTCF	chr9:25678420-25678570	AoAF	blood vessel:	n/a	chr9:25678431-25678444
48	CTCF	chr9:25678580-25678730	HRE	kidney:	n/a	n/a
49	CTCF	chr9:25678620-25678770	AG10803	skin:	n/a	n/a
50	CTCF	chr9:25678460-25678610	AG09319	gingival:	n/a	n/a

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:25678485-25678535	HL-60	blood:	n/a
2	chr9:25678753-25678803	NT2-D1	testis:	n/a
3	chr9:25681826-25681876	NT2-D1	testis:	n/a
4	chr9:25678015-25678065	Hepatocyte	liver:	n/a
5	chr9:25678015-25678065	HCPEpiC	choroid plexus:	n/a
6	chr9:25677495-25677545	HAEpiC	amniotic membrane:	n/a
7	chr9:25678683-25678733	SK-N-MC	brain:	n/a
8	chr9:25678485-25678535	AG10803	skin:	n/a
9	chr9:25678015-25678065	AG04450	lung:	fetal
10	chr9:25677495-25677545	ovcar-3	ovarian:	n/a
11	chr9:25678683-25678733	PANC-1	pancreas:	n/a
12	chr9:25678485-25678535	IMR90	lung:	fetal
13	chr9:25678015-25678065	AG09319	gingival:	n/a
14	chr9:25678485-25678535	ovcar-3	ovarian:	n/a
15	chr9:25678683-25678733	HEK293	kidney:	embryo
16	chr9:25677628-25677678	MCF-7	breast:	n/a
17	chr9:25677628-25677678	A549	lung:	n/a
18	chr9:25678015-25678065	SK-N-MC	brain:	n/a
19	chr9:25678753-25678803	AG09309	skin:	n/a
20	chr9:25678753-25678803	HNPCEpiC	eye:	n/a
21	chr9:25677628-25677678	SAEC	small airway:	n/a
22	chr9:25678485-25678535	HEK293	kidney:	embryo
23	chr9:25681826-25681876	HEEpiC	esophagus:	n/a
24	chr9:25678683-25678733	HCPEpiC	choroid plexus:	n/a
25	chr9:25678485-25678535	HIPEpiC	eye:	n/a
26	chr9:25678485-25678535	AG04450	lung:	fetal
27	chr9:25677628-25677678	SKMC	muscle:	n/a
28	chr9:25678753-25678803	SAEC	small airway:	n/a
29	chr9:25681826-25681876	HCM	heart:	n/a
30	chr9:25678015-25678065	BE2_C	brain:	n/a
31	chr9:25678485-25678535	NHDF-neo	bronchial:	n/a
32	chr9:25678683-25678733	U87	brain:	n/a
33	chr9:25678015-25678065	HRCEpiC	kidney:	n/a
34	chr9:25677495-25677545	NT2-D1	testis:	n/a
35	chr9:25677495-25677545	HRCEpiC	kidney:	n/a
36	chr9:25677495-25677545	AG10803	skin:	n/a
37	chr9:25678485-25678535	HCM	heart:	n/a
38	chr9:25678753-25678803	HMEC	breast:	n/a
39	chr9:25678015-25678065	HMEC	breast:	n/a
40	chr9:25678683-25678733	NHDF-neo	bronchial:	n/a
41	chr9:25678485-25678535	Hepatocyte	liver:	n/a
42	chr9:25677495-25677545	GM06990	blood:	n/a
43	chr9:25681826-25681876	PANC-1	pancreas:	n/a
44	chr9:25678015-25678065	AG10803	skin:	n/a
45	chr9:25678015-25678065	ECC-1	luminal epithelium:	n/a
46	chr9:25678015-25678065	HPAEpiC	pulmonary alveolar:	n/a
47	chr9:25678683-25678733	SAEC	small airway:	n/a
48	chr9:25677495-25677545	NHBE	bronchial:	n/a
49	chr9:25678683-25678733	HUVEC	blood vessel:	n/a
50	chr9:25677495-25677545	HCF	heart:	n/a

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:25675224..25676763-chr9:25677105..25678676,2	MCF-7	breast:
2	chr9:25662809..25665496-chr9:25677024..25678546,2	MCF-7	breast:
3	chr6:136437819..136438612-chr9:25676746..25677272,2	MCF-7	breast:
4	chr17:56735486..56737585-chr9:25675306..25677414,2	MCF-7	breast:
5	chr9:25676050..25679678-chr9:25684309..25687145,6	MCF-7	breast:
6	chr9:25677702..25680199-chr9:25687511..25689024,2	MCF-7	breast:
7	chr9:25680811..25683090-chr9:25706689..25708680,2	MCF-7	breast:
8	chr17:74667409..74668992-chr9:25680085..25682242,2	MCF-7	breast:
9	chr9:25662809..25665496-chr9:25677024..25678546,2	MCF-7	breast:
10	chr10:112326747..112327613-chr9:25677447..25678064,2	Hela-S3	cervix:
11	chr9:25418497..25420216-chr9:25675741..25678077,2	MCF-7	breast:
12	chr9:25664021..25666834-chr9:25677029..25679004,2	MCF-7	breast:
13	chr9:25517372..25520682-chr9:25675267..25678566,4	MCF-7	breast:
14	chr9:25292451..25293431-chr9:25673511..25674229,2	MCF-7	breast:
15	chr9:25654596..25657543-chr9:25679072..25681008,2	MCF-7	breast:
16	chr9:25675224..25676763-chr9:25677105..25678676,2	MCF-7	breast:
17	chr10:123872158..123872830-chr9:25677516..25678397,2	Hela-S3	cervix:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFT74-9	chr9:25678858-25682961	NONHSAT130501

No data

Variant related genes	Relation type
TUSC1	TF binding region
TUSC1	CpG island
ENSG00000261335	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000198680	chromatin interactions
ENSG00000138162	chromatin interactions
ENSG00000108055	chromatin interactions

Extended variants
information (count: 863 )
Associated
traits (count: 124 )

Variant overlapped rSNPs/rCNVs (count:863 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142497704	chr9:25664034-25664035	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs536678169	chr9:25664051-25664052	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs112797057	chr9:25664069-25664070	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs192180633	chr9:25664080-25664081	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs369774290	chr9:25664151-25664152	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs534310375	chr9:25664171-25664172	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs114277393	chr9:25664216-25664217	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs577415981	chr9:25664221-25664222	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs183212868	chr9:25664225-25664226	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs140814849	chr9:25664295-25664296	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs574810538	chr9:25664325-25664326	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs75688243	chr9:25664326-25664327	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs560555967	chr9:25664338-25664339	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs528131232	chr9:25664344-25664345	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs540360905	chr9:25664347-25664348	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs564926850	chr9:25664366-25664367	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs201361101	chr9:25664370-25664371	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs534803281	chr9:25664376-25664377	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs555135108	chr9:25664421-25664422	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs550584180	chr9:25664440-25664441	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs74521106	chr9:25664448-25664449	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs530037904	chr9:25664495-25664496	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs554622028	chr9:25664549-25664550	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs571317852	chr9:25664550-25664551	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs548555131	chr9:25664551-25664552	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs368306684	chr9:25664570-25664571	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs75733484	chr9:25664585-25664586	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs114506723	chr9:25664586-25664587	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs187973001	chr9:25664611-25664612	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs374098361	chr9:25664613-25664614	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs570941941	chr9:25664625-25664626	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs116516437	chr9:25664644-25664645	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs78540935	chr9:25664649-25664650	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs574747593	chr9:25664656-25664657	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs373584989	chr9:25664686-25664687	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs113654715	chr9:25664754-25664755	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs554131069	chr9:25664766-25664767	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs572841092	chr9:25664795-25664796	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs569082774	chr9:25664811-25664812	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs539925819	chr9:25664858-25664859	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs369834415	chr9:25664862-25664863	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs73644559	chr9:25664916-25664917	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs193137450	chr9:25664917-25664918	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs35670897	chr9:25664933-25664934	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs374910539	chr9:25664986-25664987	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs562675267	chr9:25665009-25665010	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs75570127	chr9:25665016-25665017	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs116194440	chr9:25665037-25665038	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs184388274	chr9:25665041-25665042	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs372871670	chr9:25665085-25665086	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:124)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Pancreatic cancer	21811587	CNVD
Bipolar disorder	19114987	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
early-passage human iPS cells	21368824	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD

Chromatin state (count:397 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:25665400-25665800	Active TSS	Placenta	Placenta
2	chr9:25672200-25673800	Enhancers	Placenta	Placenta
3	chr9:25673000-25673200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:25673200-25673400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:25673200-25677200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:25673400-25674200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:25673400-25675200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:25673800-25677200	Weak transcription	Placenta	Placenta
9	chr9:25674200-25674400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:25674200-25674400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr9:25674400-25675400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:25674400-25677400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:25675000-25676200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr9:25675200-25675800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:25675200-25676000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:25675200-25676600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:25675200-25677000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:25675400-25675600	Enhancers	NHDF-Ad	bronchial
19	chr9:25675400-25675800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr9:25675400-25675800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr9:25675400-25676000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:25675400-25676000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr9:25675400-25676000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:25675400-25676200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr9:25675400-25676200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr9:25675400-25676200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:25675400-25676400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:25675400-25676400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:25675600-25675800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr9:25675600-25676000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr9:25675600-25676600	Weak transcription	NHDF-Ad	bronchial
32	chr9:25675600-25677000	Enhancers	Brain Germinal Matrix	brain
33	chr9:25675800-25676400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:25675800-25677000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:25675800-25677000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr9:25675800-25677000	Weak transcription	Fetal Lung	lung
37	chr9:25675800-25677200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr9:25676000-25676200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr9:25676000-25676200	Enhancers	Aorta	Aorta
40	chr9:25676000-25676400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:25676000-25677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr9:25676000-25677000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr9:25676000-25677000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr9:25676000-25677600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:25676200-25677200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr9:25676200-25677400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr9:25676200-25678400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:25676200-25678800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:25676400-25676600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:25676400-25676600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links