Variant report

Variant	esv3451308
Chromosome Location	chr7:65315417-65318315
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VKORC1L1-4	chr7:65318013-65318060	NONHSAT121122

Extended variants
information (count: 92 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:92 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs188246857	chr7:65316003-65316004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs574840428	chr7:65316032-65316033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs540391295	chr7:65316043-65316044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs182899320	chr7:65316062-65316063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs571341459	chr7:65316098-65316099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs201488049	chr7:65316099-65316100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs187241633	chr7:65316149-65316150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs138702094	chr7:65316195-65316196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs564790613	chr7:65316200-65316201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs530725829	chr7:65316202-65316203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs537860500	chr7:65316219-65316220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs560950113	chr7:65316237-65316238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs529930313	chr7:65316283-65316284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs546360757	chr7:65316322-65316323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs55796207	chr7:65316331-65316332	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs55912881	chr7:65316378-65316379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs55884429	chr7:65316395-65316396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs538632766	chr7:65316435-65316436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552201596	chr7:65316441-65316442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs569530568	chr7:65316477-65316478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs538553168	chr7:65316483-65316484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs376438852	chr7:65316489-65316490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs201523597	chr7:65316490-65316491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs574912535	chr7:65316528-65316529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs534446213	chr7:65316530-65316531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs192992922	chr7:65316542-65316543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs576927823	chr7:65316545-65316546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs142780409	chr7:65316567-65316568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs370299658	chr7:65316630-65316631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs574833455	chr7:65316631-65316632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs182987623	chr7:65316645-65316646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs544159232	chr7:65316660-65316661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs71564937	chr7:65316676-65316677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs187976277	chr7:65316691-65316692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs561272171	chr7:65316713-65316714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs558991147	chr7:65316775-65316776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs529838052	chr7:65316783-65316784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs373789000	chr7:65316787-65316788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs560240060	chr7:65316808-65316809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs546852017	chr7:65316818-65316819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs532254430	chr7:65316899-65316900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs147433899	chr7:65316915-65316916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs560386350	chr7:65317022-65317023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs568891287	chr7:65317025-65317026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs367941370	chr7:65317042-65317043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs371486086	chr7:65317092-65317093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs386714055	chr7:65317100-65317101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs373528360	chr7:65317111-65317112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs35197648	chr7:65317130-65317131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs568783327	chr7:65317134-65317135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65316000-65317400	Weak transcription	Adipose Nuclei	Adipose
2	chr7:65317400-65317800	Enhancers	Adipose Nuclei	Adipose
3	chr7:65317400-65318800	Enhancers	HepG2	liver
4	chr7:65317800-65321800	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links