Variant report

Variant	esv3451410
Chromosome Location	chr13:86581601-86583549
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:73 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs565152961	chr13:86581604-86581605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs563374950	chr13:86581617-86581618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs182803561	chr13:86581619-86581620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577012391	chr13:86581620-86581621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs6563470	chr13:86581624-86581625	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs563005259	chr13:86581707-86581708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs530100040	chr13:86581780-86581781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs548245787	chr13:86581789-86581790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs548772977	chr13:86581811-86581812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs9602935	chr13:86581820-86581821	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs4550343	chr13:86581867-86581868	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs527656723	chr13:86581891-86581892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs552485138	chr13:86581903-86581904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs558968609	chr13:86581908-86581909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs570891488	chr13:86581919-86581920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs546849321	chr13:86581975-86581976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs377298296	chr13:86581976-86581977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs61329797	chr13:86582044-86582045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs550058740	chr13:86582047-86582048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs538256514	chr13:86582049-86582050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs556153777	chr13:86582055-86582056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs148111453	chr13:86582097-86582098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs186707639	chr13:86582099-86582100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs536315628	chr13:86582113-86582114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs147256724	chr13:86582130-86582131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs572901392	chr13:86582144-86582145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs533763968	chr13:86582164-86582165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs9594099	chr13:86582198-86582199	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs7988052	chr13:86582217-86582218	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs191607332	chr13:86582234-86582235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs556483618	chr13:86582260-86582261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs183338536	chr13:86582301-86582302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs544405806	chr13:86582308-86582309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs562510785	chr13:86582313-86582314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs9602936	chr13:86582321-86582322	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs9602937	chr13:86582456-86582457	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs9602938	chr13:86582476-86582477	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs561521198	chr13:86582494-86582495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs187941492	chr13:86582528-86582529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs117386742	chr13:86582532-86582533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs531869042	chr13:86582533-86582534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs550363649	chr13:86582534-86582535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs74356815	chr13:86582576-86582577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs60280160	chr13:86582607-86582608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs68190132	chr13:86582608-86582609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs536033292	chr13:86582609-86582610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs397717959	chr13:86582612-86582613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs201474389	chr13:86582613-86582614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs548348513	chr13:86582622-86582623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs566572498	chr13:86582660-86582661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Bipolar disorder	19114987	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86581200-86586200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links