Variant report

Variant	esv3452693
Chromosome Location	chr1:217404307-217404714
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217398384..217401178-chr1:217402478..217405024,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559632127	chr1:217404332-217404333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs71643451	chr1:217404370-217404371	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs566948244	chr1:217404375-217404376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs71643452	chr1:217404391-217404392	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs71643453	chr1:217404396-217404397	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs141591157	chr1:217404402-217404403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs374663898	chr1:217404423-217404424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs551115708	chr1:217404444-217404445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs566474948	chr1:217404467-217404468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs7536166	chr1:217404499-217404500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs6682416	chr1:217404514-217404515	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs186461019	chr1:217404542-217404543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs566027887	chr1:217404605-217404606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs372038740	chr1:217404614-217404615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs58651975	chr1:217404626-217404627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs57115193	chr1:217404631-217404632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs534497554	chr1:217404644-217404645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs551587990	chr1:217404645-217404646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs571371407	chr1:217404646-217404647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs12040122	chr1:217404652-217404653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs12033105	chr1:217404653-217404654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs573263530	chr1:217404667-217404668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs12026070	chr1:217404670-217404671	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs553227539	chr1:217404676-217404677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs573512214	chr1:217404677-217404678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs545389992	chr1:217404681-217404682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs12026072	chr1:217404691-217404692	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Liposarcoma	21253554	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
Multiple myeloma	16461302	CNVD
van der Woude syndrome	22470819	CNVD
van der Woude syndrome	20818247	CNVD
T-cell lymphomas	19863542	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hepatocellular carcinoma	18803288	CNVD
Urothelial tumor	18831757	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21720365	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Medulloblastoma	16783165	CNVD
Basal cell lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Holoprosencephaly	19184110	CNVD
Breast cancer	21069454	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Mental retardation	19951919	CNVD
Non-syndromic sensorineural hearing loss	17873649	CNVD
Acute myeloid leukemia	17268525	CNVD
Lung cancer	16740712	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17053054	CNVD
Developmental delay	21147756	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	14699429	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217402800-217405800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links