Variant report

Variant	esv3452764
Chromosome Location	chr10:781102-784800
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:783561..786479-chr10:789093..790752,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231601	chromatin interactions

Extended variants
information (count: 303 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:303 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576997612	chr10:781118-781119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs2246654	chr10:781124-781125	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs556310346	chr10:781159-781160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs556389662	chr10:781172-781173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs77861402	chr10:781188-781189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs76948303	chr10:781189-781190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs576166674	chr10:781214-781215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs368367814	chr10:781234-781235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201529984	chr10:781239-781240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs76793293	chr10:781248-781249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs60813052	chr10:781251-781252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs541849982	chr10:781258-781259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs561715400	chr10:781263-781264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs114176735	chr10:781288-781289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs146198890	chr10:781302-781303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs564781578	chr10:781334-781335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs56234340	chr10:781339-781340	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs201666200	chr10:781342-781343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs113786864	chr10:781346-781347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs550312767	chr10:781350-781351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs139578192	chr10:781366-781367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs56154362	chr10:781369-781370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs56018853	chr10:781381-781382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs367577364	chr10:781389-781390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs545304608	chr10:781392-781393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs61831405	chr10:781393-781394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs61831406	chr10:781398-781399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs146358786	chr10:781405-781406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs71482845	chr10:781413-781414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs565140717	chr10:781416-781417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs187296013	chr10:781417-781418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs11599554	chr10:781422-781423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs56079144	chr10:781428-781429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs529299134	chr10:781433-781434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs530637747	chr10:781437-781438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs550702505	chr10:781440-781441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs71491305	chr10:781446-781447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs561819571	chr10:781459-781460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs11253387	chr10:781464-781465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs71494936	chr10:781469-781470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs200045902	chr10:781484-781485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs567258411	chr10:781508-781509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs71297924	chr10:781510-781511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs184021451	chr10:781512-781513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs79926203	chr10:781517-781518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs77415312	chr10:781518-781519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs78138285	chr10:781533-781534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184301563	chr10:781535-781536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs79369365	chr10:781540-781541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs190765831	chr10:781558-781559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:779400-785400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:779600-785200	Weak transcription	Gastric	stomach
3	chr10:784000-790600	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links